GgaINT1018774 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8345454-8346846:+
Coord C1 exon
chr10:8345454-8345551
Coord A exon
chr10:8345552-8346759
Coord C2 exon
chr10:8346760-8346846
Length
1208 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GCATAACTCTGCTTTTTTAGGTT
3' ss Score
8.34
Exon sequences
Seq C1 exon
TTCCGGAGTTCTCTGTCTCTACTGATGGAGACACTCAACGCAACCACCCCTCACTACGTGCGATGCATAAAGCCTAATGATGAAAAGCGGCCTTTTGA
Seq A exon
GTAAGTGTGGTACTTGTTGAGCTTTTTGTATTTGTCGTGATGTTTGGGGTGAAAATACAGCGTTCCGTATGCTTAGGTTTGCTCTTAGCTGATGTGGTATGGATTAGTGCCCAATCTTTGGGGAGTAGCAGCTACTGCAGTTTTTTTGAGTTTCCCTCTTGTCCACAGAAGTATTTGTAAGTCGGAAAAGGTATGAGAAGCACTGAACATAACTTTGGCTTTTTCACACACGTTTATTTTACTTCAGTGTTATAGCACAGCTAGATAGTTGTGTTTGCCTAACTCCTGTGTTCAACCTGATAACCACTGACTGAGTGGGAGCTGACCTTGCTGCAGCTGTTGGGTTCTGTGGGCAAGCACATAGCAGCTCTCTAGTTTCAGGTATACGGCTTTTAGTTGGAATGTAATGCGCTGACAAGTGGAATACACACGCCTATGTATACTCTACATATCTGAACAGGAAGGAAGAGGCAACGTTTATGTGTTTCTAAATTAATTTTTAGCAGGATTAGCTCATTTCCATGGAATTGGACAAAATCTCTCCGTGAAAAATATCTTACAGTTTTATTGTCCCTGTACTGAAACCTGATTGTTTTGTGTAGTAGCAATAAAATGGAAAACAGTTTGGATAATATAAAAGTATGTCTGAATTAGACTAGGAAAGCATGGAAAGAACAATGTCACTAACTGTGAGTCACTGAAATCTCTTTGATAGTAATGGACTGATTCTGTAGCACAGTGCTTTGTGCACCTTGGTCCAGAGTTGGAAAGGCTTTTTCCATGCCTTTTGTTGGCAGTTTTGAACCAATATATCCTTATACCAATCTTATCTTATTTATAATTGGTGCACTGAGGAGTACCTGGAGAGGGTTATTCCCAGTAGACCGCTGAGGAAATTCATTTCTGTGTATGTTCTGTGCCTTAACATGATCCTTGACCTCCTGGTAATATGAACAGTCATGCTTCATATAGAAAGGAAAAGGACTTTTCATAAAACAGAAATAAGGACATTATTCCTCTTTTTTGAGGAAGAAAACCTAAATACTCCCTCTTACACCCCAAGAAAAGCAAACAGGTAAGATACCATACAAAATACAGGGAGCTCTTTGTCCTGTGAGCAGAAATAGAAATCCAGTTAGTAGAATTGTTATAATTGTTATGGTGTGGCAAGCTTAGCACATATACAAAGCATAACTCTGCTTTTTTAG
Seq C2 exon
GTTTGACTCAAAAAGGGTGGCTCAGCAACTGCGTGCATGTGGTGTTTTGGAAACCATTCGGATCAGTGCGCAGAGCTATCCGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGGAGTTCTCTGTCTCTACT
R:
GACGGATAGCTCTGCGCAC
Band lengths:
182-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]