GgaINT1020567 @ galGal4
Intron Retention
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128374641-128376091:-
Coord C1 exon
chr2:128375996-128376091
Coord A exon
chr2:128374710-128375995
Coord C2 exon
chr2:128374641-128374709
Length
1286 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
AGCACTGTTCTTGTTTACAGAAA
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTTGATGAAGCTGTAGCCGTACTACAAGCCCACCAAGCTAAAGAAGCTGCTCAAAAGGCAGTTAATAACCCTACTGGGGTTCCAAGTGTTTAATAA
Seq A exon
GTAAGTTTTCTGAGTAATGTAGCTTTGTAGGTCAGTGAGGGCAATAGTTCCTACTCCATGGCAGTGAGCTTCCAGGCAGTCTGTCATTTACAGCCACAGAAAGCAGCAGCTGTGGTTGCAATTGTAGAACAGTTTTGTGCTCCGTTTTGTTGTCCAGTTCAGCAGCTTTCGTTTAGCAAATGCTACTGGCACTTCATCTCGTATATTTAGTGCGAATGGGAGCTTTGTTTCTAACAGCCTATTTAGCTGGTGCATGCCTGCAAAAATGAGCAGTTCTGTCAGACACTACTATTTGTACTGTTGTTCAGGAAGAACTTGAGTAAGTTGTGGAAGTAAGCTTAAAATGATGCTTAGCCCTATTTTCTTTACGTATGGAATAGCATATTTACATCATAATTTATTTACATATGCCAAAATTTAAAGTCACAGTAATTAAAAACTAAATTACAAATTTTCTCAATTTTACATTTGAGTCAGTTTAGCTTTAATGGTAGTTAAAATGCTATCTTGGTTATCTTCTGAGAGGCTATATCTGAATCTTGCAAGACAGGAAGAAGCGAAAGGTCCTATCCCTACAGTTTCAAAAGGGGAAAAATGCCGTGGAGTTGAGGATGACAGAGGAGTCTATGTCCCATCCAATCTGGATGGGCTTGGTGTGCATGTGAACTTCTCACATTTATAGCTAGTGGTAGAAGAGGCCTGCTTTTAAATGTGATTGCTTAGCCTTCATTTTTCTTGGTCTTCTCCCTTCTGCAGGCATGAGATGGCCTTCTGGAGGCAGAATGAGTCATGCTTTTCCCTTGCTTTTCTTTTTTCTATTTTTTCTTTTTTTGCTAGTGATACTTTCACCCTGGACATAAGTGCTGAACGCTTGTCTAAACTGAACTAAGAATGTTACTGCTTGTGCTCTGTAATGTTCTAGTGGTTGGAATTTGAAAATACTGTTACTAATTGTTAGAGCTTTTGGTATGCTCTCATAGAGATGACCTGCAATCAAATTGTTACAGTAACGAGGGATTGTGCCTAGTCCAAGGCCAGGCTGCGCAGCGTACTGTTCAGTTTTAGACTGTTTTATCTTAACCAAGCATCACAGACTTGAGACACTTTTCAGTATCTCTAAAAAGCGGGACACCTACCTCTGTGATGCTGTTTGTTAAAGAGCTTTGGTGCGATTTATACTCTGAAAGCCCATGGTATTTTCAGGTACTCAGTTGCAGAAGGAGTGTCGGAAAGGAAGGGGCTGCTTTGGTTTCAAATCCTCCTAACAGCACTGTTCTTGTTTACAG
Seq C2 exon
AAAGATCCGGGAACTGCAGTCTAGAACTTCGCTTCACCGAAGAAAAAAAAAATTTAAACATGGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450:ENSGALT00000023333:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0065813=PABP=PD(9.7=22.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]