GgaINT1021182 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:405686-406073:-
Coord C1 exon
chr25:405858-406073
Coord A exon
chr25:405793-405857
Coord C2 exon
chr25:405686-405792
Length
65 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTGACGTCTGTCCCCCAGATG
3' ss Score
8.15
Exon sequences
Seq C1 exon
GGAACCCCGACCAGCCCTACACCATCGTGCCAGCCCCCCCGTTGGCCTACAGCACGCTGGGGATGGTGGTCAGCCTGGTGGCCCTGGTGGCTCTGCTGGTGGCCGTGGTGGCTGTGGCACTGTGCTACCGCCACCGGCAGAAGGGAAAGGAGAACAGACACCTGGCCGTGGCGTACACAGCAGGACGGACGGACACCTCTGAGTACGTGGTGCCAG
Seq A exon
GTGAGCGGCACACTGCGACGCGGCTCCGGGCACCCCTGGCACCAGGGCTGACGTCTGTCCCCCAG
Seq C2 exon
ATGTGCCACCGAACCACACGCACTACTACTCCAACCCCAGCTACCACACGCTGTCCCAGTGCACATTGCCTGCCCACAGCAGCCAGGACAGAGCCAGCTCCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.528
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(11.8=5.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGAACAGACACCTGGC
R:
TTTAGGGAGCTGGCTCTGTCC
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]