GgaINT1021395 @ galGal4
Intron Retention
Gene
ENSGALG00000004029 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:5909267-5910402:-
Coord C1 exon
chr19:5910189-5910402
Coord A exon
chr19:5909449-5910188
Coord C2 exon
chr19:5909267-5909448
Length
740 bp
Sequences
Splice sites
5' ss Seq
AAAGTGCGC
5' ss Score
3.86
3' ss Seq
GTGTGTGTGCGTGTCCGCAGCAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGGCGACGACGCCCGGAGCCGGAAGGATCGCGCCGGCGCGCCAAACGCAGCGCGCCCTCTGCCGGCGCGCGATCGGCTCCGCCCTGCTGTGCGTCGTGACGTCACCACGCCGCTCTCTCTTCACCCCACCCCGGAACGTGACGGCCGCCACGCGCCCGATGCGCACGCGCGAGGGAGGCGCGGGGCGAGCCGGGCGCGGGAGGCGGAGCCAAAA
Seq A exon
GTGCGCGCACGCGCGGTGCCCCGGCGCGCGCGCCGCCTGAGCCGAGAGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGGCCCCGAGCCCCGTGGCCATAGAAGGAAGTGCGGCCGCTCGCCCAATCCCCGGTGGGGGCCCTCCCGGGCACGGACGGGGCGGGCTCGGCCTTATCCCGGCCCCACTGAGCCGTGCGCTGTGGGGGGCGGTGGGGGTCAGAGTGCGGGCGGCCCTCAGAGCCCTCTGTGTGTGTGTGCGTGTCCGCAG
Seq C2 exon
CAAATCCAGGCCCTGCTGGCTCCCCCTAAGAGCGAAGATGGGGAGAAGAGGAGCAGGAGGCCTGAGAAGGAGCCCAGGAGAAGTGGCAGGGCCACTAACCACGACAGCTGCGATAGCTGCAAGGAAGGAGGGGACCTGCTGTGCTGCGATCACTGCCCCGCCGCTTTCCACCTCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029:ENSGALT00000006417:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.607
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062824=PHD=PU(52.1=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGTGCGTCGTGAC
R:
CAGCACTGGAGGTGGAAAGC
Band lengths:
314-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]