GgaINT1021581 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11151250-11152428:-
Coord C1 exon
chr5:11152324-11152428
Coord A exon
chr5:11151343-11152323
Coord C2 exon
chr5:11151250-11151342
Length
981 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
AACAATAAATCTACTTGTAGGCA
3' ss Score
5.24
Exon sequences
Seq C1 exon
ACTGCCTTACAAAGTGGGATGGAACGTGTGCAGTCATTTTTCTTGAAGAACAAATGCCGTTTGCCTCTCAATCCCAGTCTTGTGGCAAAAGAACTAAATATTAAG
Seq A exon
GTATAGGTTGTTGTTTGTTTGTTTGTCAAAGTTACACATAGGCAAAGCTTCTACAAATAGCAAAATTAATTTACTTTCTTGAAAGGCCTTTACACTAGTTGGAGAGTTCTAATTAAAAATGCTGATTGAAAGAGGGAGTAAAATTAATTAAGAAAAGAAAAATTATACAAATACTTATACCAGGGGAAGGTCCTGTTAGTAAATAATTAAAATGTGATTATTTCTTCAGACCTTTTCTGCTTTGAGACCAGCAATTGTGGCTGTAGGAGAGGAATACTCAAAAGCGTATGAGAAGGTCTTGTTTTCAGTAGTAATCAAAAGAGAAAAGTGAATAACGCTATAAAGATAAAACAATGAATAAATACCGTGAAATCAGTGAATGTGCCTGTTACTGGTTGTGCCAGGGAAACAGGCAGTAGCTTTATTTCATTATAAAAGTCCAACAAATGATAGTGTAGAAGCTGATAAATGAGTTTTTGCTGAACTCTGCAAAGTTTGACCGTGTTTGACAGCCTTGATTATATCATTGTGCGTAACTGAGAATCTAAAGGTCCGTGAGCATGGGATTTAATCCAGAGTAGATCCAGAGTTCCCTTTGCTTTCCTTCTCTACTACAAGTGTCTTAATTAAATCATGAATATGTATTTGAAAACAGATAAATGAGAACATAGTGAAAGGCACAAATATCCAGTTTTTATAGTCTTAAGTTTTAAAAAGTTGCTGGTAAAATATTTATCCATGTTTTACTCATTCTTCGATGCAACACAAAACATTACTGTGCTGAACTGTTGGCTTTTGTACAAGAATTGAACAAATATCAGCTAAAGGGCCCTTTGTTCAAAGGAAACACTTTCACCACAATTGCAATGTTATGAGTGTGAATATGCACATTGTGTCATACGTGCTTGTTGTCAGAATGTCATGTTTCCTGCACTAGCCCTTGTAGTCCTTTTTGAATAGTAACAATAAATCTACTTGTAG
Seq C2 exon
GCATGCTCCTTCTTCAGCTCCAATGCAGTACCACTGAAAATTGCACTGATAAATGCAGACCCTCTGGGAGAAGAAATTAATGTGATGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCTTACAAAGTGGGATGG
R:
TCACATTAATTTCTTCTCCCAGAGGG
Band lengths:
190-1171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]