GgaINT1021664 @ galGal4
Intron Retention
Gene
ENSGALG00000026392 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr19:5927228-5927619:+
Coord C1 exon
chr19:5927228-5927410
Coord A exon
chr19:5927411-5927472
Coord C2 exon
chr19:5927473-5927619
Length
62 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GGCTGACATGCAGCCCCCAGCCC
3' ss Score
-3.49
Exon sequences
Seq C1 exon
GACGCGTTTCGCCGGCGCGGGGGCACTGTGCGCGATGGGGAGAAGGTGCTGCGCATCGATCCCGGAGCGGTGATCACCGTCACCACCACCGCCGGGCTGTACTGCGCTCCCCGGCTCATCATCGCCGCCGGCGCGTGGACCAACGCCGTGGTGGCACCGCTGGGCCTCCGCCTGCCTCTGCAG
Seq A exon
GTAAGGGCTGGTGGCCACGGGTGGTGGCGTGGCCACGGGCACGGCTGACATGCAGCCCCCAG
Seq C2 exon
CCCCTGCGCATCGACGTGTGCTACTGGAGGGAGAAGGAGCCCGGCAGCGGCGGCTCGGTCACCCCCTGCTTCATGGCCACGGGGCTGCCCTACGCTCCCCATGGGATATATGGGCTGCCCGCCCTCGAGTACCCCGGGCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026392:ENSGALT00000045943:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(17.0=100)
A:
NA
C2:
PF0126619=DAO=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCACCGTCACCACCAC
R:
CTCCAGTAGCACACGTCGATG
Band lengths:
143-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]