GgaINT1021665 @ galGal4
Intron Retention
Gene
ENSGALG00000026392 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr19:5927473-5927848:+
Coord C1 exon
chr19:5927473-5927619
Coord A exon
chr19:5927620-5927689
Coord C2 exon
chr19:5927690-5927848
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCACCGAGCGCTGTCCCCAGGTG
3' ss Score
6.68
Exon sequences
Seq C1 exon
CCCCTGCGCATCGACGTGTGCTACTGGAGGGAGAAGGAGCCCGGCAGCGGCGGCTCGGTCACCCCCTGCTTCATGGCCACGGGGCTGCCCTACGCTCCCCATGGGATATATGGGCTGCCCGCCCTCGAGTACCCCGGGCTGGTCAAG
Seq A exon
GTGAGTGTGGCACAGCGGTGGTGGCACCGCGGTGTCCCTTCTGTTTGTCCCCACCGAGCGCTGTCCCCAG
Seq C2 exon
GTGTGCTACCATCATGGCAGCCCCACTGACCCCGAGGAGAGGGACCGGACCCCCCCGGGCTCCCCACGTCCCCACGTCGCCCTCTTGAGCAACTTCATCAGCAGTTACCTGCCTGGGCTGGAGCCGCAGCCGGCTGTGCTGGAGAGCTGCCTCTACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026392:ENSGALT00000045943:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.6=100)
A:
NA
C2:
PF0126619=DAO=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGGAGGGAGAAGGAGCC
R:
CTCTCCTCGGGGTCAGTGG
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]