GgaINT1021763 @ galGal4
Intron Retention
Gene
ENSGALG00000004689 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr17:5230729-5230938:+
Coord C1 exon
chr17:5230729-5230796
Coord A exon
chr17:5230797-5230882
Coord C2 exon
chr17:5230883-5230938
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAA
5' ss Score
1.89
3' ss Seq
TCTTGAAGTTCGGATCTTAGAAT
3' ss Score
2
Exon sequences
Seq C1 exon
TCTGTGGCAGTTAAAGTATGTATTGTGTATACTGAAAAGATACACAGTAGTGTATATACGAAAAACAA
Seq A exon
GTAAAAAATTGCTATTGTTGAACCAACACTAACCGAGAAAGTACAAATAAGATCTGTCTAAGCAGATCTTGAAGTTCGGATCTTAG
Seq C2 exon
AATATTCTGATAACTTCATCACCACTTCTGAGGGGTCCCATCTTCAAAATGCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689:ENSGALT00000007470:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCAGTTAAAGTATGTATTGTGT
R:
AGCATTTTGAAGATGGGACCCC
Band lengths:
119-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]