GgaINT1021764 @ galGal4
Intron Retention
Gene
ENSGALG00000004689 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr17:5230883-5231468:+
Coord C1 exon
chr17:5230883-5230938
Coord A exon
chr17:5230939-5231373
Coord C2 exon
chr17:5231374-5231468
Length
435 bp
Sequences
Splice sites
5' ss Seq
GGAGTCAGG
5' ss Score
-8.71
3' ss Seq
ATCACGGTTACTGATGAGCTGAA
3' ss Score
-21.8
Exon sequences
Seq C1 exon
AATATTCTGATAACTTCATCACCACTTCTGAGGGGTCCCATCTTCAAAATGCTGGA
Seq A exon
GTCAGGATGCATTCAGACAATTACCTACTTTCTCTCTGAGAAAGCTTAGGAGGGAGTTAGTCCTTCACGAGTGCCTACTGAGCCCTTCATTTCACTCTCTGGGGGAGTATAAAGCATCTGCTGCCTTTTAAAGGTGATCCTGGTGTAAAGCTTTTGAGAGGTGGGTGTTCTGTTTTTTAAATTATTTTCAAGCAGTTCTGTGGTCTGAGTTTCCTTGGTAACACCTTGTAGCTGATATAATGTTCTACAGAATCTCTTTATTCAGACATACCTTTTTTTTTTTTTTTTTTTTAATTTTCCCAGCAACTTCTTATGTCTGTTGCCCCCCTTTGTTTCGTTTCCAATTCCTGTCTGAGAACTTCTCTTATTATTCCCTTCTCCTCCTGGCACTTGATAAACACGTTCATGGCTGGTTATCACGGTTACTGATGAGCT
Seq C2 exon
GAAAGGAGTGTTGGCAAATCTGAATTTTACTCCAAGGATGGGGGATGCAGGAGAACTAATTCTGTTACGGGATGTAACAGAGAGAGCAAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689:ENSGALT00000007470:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]