GgaINT1022138 @ galGal4
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
AADN03027100.1:6682-7340:-
Coord C1 exon
AADN03027100.1:7172-7340
Coord A exon
AADN03027100.1:6865-7171
Coord C2 exon
AADN03027100.1:6682-6864
Length
307 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCTGCTGGTGTTGTCCACAGCTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
CATCCATGAGTACCGCCTGTCGGGCTGGCTGGCCCAGCAAGAAGACATCCATCGCATCGTGCTCTACCAAACCGACTGCACTCTGACGCCGTGGACCGTGCGCTGCATCCGGCAGGCGGACTGCATCCTCATCGTTGGGTTGGGTGACCAGGAGCCAGCGCTCGGAGAG
Seq A exon
GTGAGGGATGTGTGATGAGGTGGGCACGGCAGGTGGAACCCAATGCCAAATGGGTGGACGTGGCAGGGACAGCTCAACTCCAAATGGAGTGGACGTGACGTGGACAACCCAATGCTAAATGGGTAACGTGGATGGACAGCCCGACACCAAATGAGTGGACGTGGCCTAGACAGCCCAGTGCCAAACGGGGTGAACATGGTGTGGCAACCCAGTGCCAAATGGGTGGACCTGGCAGGAACAACTCAATGCTGAACGGGGTGGACGTGATGTGGACAACCCAGTACCAAGCTGCTGGTGTTGTCCACAG
Seq C2 exon
CTGGAGCAGATGCTGGAGAACACGGCGGTGCGTGCACTGAAGCAGTTGGTTCTCCTGCACCGTGAGGATGGTCCCAGCCCATCGCGCACCGTTGAGTGGCTCAACATGCGGAGCTGGTGCTCGGGCCACCTGCACATCAAGTGCCCGCGCCGCGTCTTCTCCCGACGCAGCCCCGCCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATGAGTACCGCCTGTC
R:
GGGCTGCGTCGGGAGAAG
Band lengths:
342-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]