GgaINT1022148 @ galGal4
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
AADN03027100.1:1589-2325:-
Coord C1 exon
AADN03027100.1:2173-2325
Coord A exon
AADN03027100.1:1769-2172
Coord C2 exon
AADN03027100.1:1589-1768
Length
404 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
GTGACTGAACTATCATCTAGGCT
3' ss Score
4.62
Exon sequences
Seq C1 exon
GTGCCCGACATGGCAGAGATCCAGTCGCGGTTGGCGTATGTGTCGTGCGTGCGGCAGCTGGAGGTGGTGAAGTCCAGCTCGTACTGTGAGTACATCCGACCCCCGATCGACCGCTTCAAGACGATGGATTTCGGCAAGTTCGATGAGATCTAT
Seq A exon
GTGAGTCGGGGACGAGGAGGCTGGCGGGGTGGCTTTGGACCATCAATGGGGCGTCCCACGTCGTGGGTTGGTGGGTTCTTCAGCCATCATTTGGGGTGTCCTGGTCATGAACAGGGTGTCCTGGCCACGAATGGGGTGCCCAGATATGAATGGAGGCGTCCTGGCCACCTGTTGAGCACCCAGGTCGTTAACCGTGTGCGTCCTGGTCATCAGGTTTCATCAACCAGCTATGAATTGGGCGCCCCAACCACCATTTAGGGTGTTTTGGCCCATCGGTTATGGTGCCCAGGTCACTGGGTTGGTTGCCCCAGCCATTAACAAGGTACACCAGGCCACCATTTGTGGTGTCCCGACCATTGCTTGTGTGCTCTGACTATTAATGTGGTGACTGAACTATCATCTAG
Seq C2 exon
GCTTGTCCAGACCATCATCTGCGGTGCCCAAGCCATCAATGGCAGTGTCCTGGCCATCATTTGAGGTGCTTGGGTCATCATTCGTGGTCCCCATGTCATCATCTAAGGTTTCCTGACCACTGTTTGGGTGCCCCAGGCAAAAGTTGGGTGCCCTTTACCATTGGTTGGAATGTCATTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGCAGAGATCCAGTCG
R:
GGCAATGACATTCCAACCAATG
Band lengths:
327-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]