GgaINT1022149 @ galGal4
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
AADN03027100.1:1358-1768:-
Coord C1 exon
AADN03027100.1:1589-1768
Coord A exon
AADN03027100.1:1475-1588
Coord C2 exon
AADN03027100.1:1358-1474
Length
114 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGTGGCCACTCTCCCCACAGGAT
3' ss Score
12.97
Exon sequences
Seq C1 exon
GCTTGTCCAGACCATCATCTGCGGTGCCCAAGCCATCAATGGCAGTGTCCTGGCCATCATTTGAGGTGCTTGGGTCATCATTCGTGGTCCCCATGTCATCATCTAAGGTTTCCTGACCACTGTTTGGGTGCCCCAGGCAAAAGTTGGGTGCCCTTTACCATTGGTTGGAATGTCATTGCC
Seq A exon
GTGAGTTGGGATGCCATAGCCATCAGCTGAGTGCTTGGGCCATCCTTTGAGCCATCCAAAGCCATCATTTGGTGTAGCCAGGCCACCAACGGGCTGTGGCCACTCTCCCCACAG
Seq C2 exon
GATGTGGGCTACCAGCATGGCAAGGTGGTCTTTGATGGCTGGAGTCGGGGTGACATCATTGAGAAGATGGTGAAGGACCGGCGCTCGGCTGACTTCTATGAGAGCAAACGCATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAATGGCAGTGTCCTGG
R:
CTCATAGAAGTCAGCCGAGCG
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]