GgaINT1022207 @ galGal4
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2075143-2075703:+
Coord C1 exon
chr25:2075143-2075439
Coord A exon
chr25:2075440-2075691
Coord C2 exon
chr25:2075692-2075703
Length
252 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTTCTGAGACCATCAGTTAGAAG
3' ss Score
-10.05
Exon sequences
Seq C1 exon
AAGCCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAGGTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAAGTAAGTCCACTCCCAGCACCTCCACAACTCCTACTGCAACGCAGCCAACACCACTGGGACAGTTAACTGTGCAGCAGCCAGGGCAGTCCAGTCAAGCTACTAACCCCAAATTAG
Seq A exon
GTAAGACTTGGAGAAGCAAGGGGACTCGAGTGTGTAACACTGTCTGTAATTTGCTTTTCAAACATACAGCTTAGAGCTGAAGTGCAGAAGTTGAGTCAGAGCTCCTGGGTTCTATTTTTGCTTTGGGCACTGACTCATGCTTCATCTCCCTACCAGCCTGGAAGACGACGAGCGTTGTGCCGTAGTGCTCAGTTTGCTCTGAGAACCCCCTAGATTTCATGTTTTGTAGAATGTTCTGAGACCATCAGTTAG
Seq C2 exon
AAGTCCCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]