GgaINT1022730 @ galGal4
Intron Retention
Gene
ENSGALG00000014755 | PRSS2
Description
Gallus gallus protease, serine, 2 (trypsin 2) (PRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_205384]
Coordinates
AADN03009585.1:654-1329:+
Coord C1 exon
AADN03009585.1:654-909
Coord A exon
AADN03009585.1:910-1192
Coord C2 exon
AADN03009585.1:1193-1329
Length
283 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TGTCGCTACTCTCCCGGTAGACA
3' ss Score
8.16
Exon sequences
Seq C1 exon
AGCCGTATACAAGTGAGGCTGGGAGAGTACAACATCGATGTGCAGGAAGACAGCGAAGTAGTCAGAAGTTCATCAGTAATCATTCGCCATCCTAAATACAGTTCAATAACCCTCAATAATGACATTATGTTGATCAAGTTGGCATCTGCGGTGGAATACAGTGCCGACATTCAACCCATAGCTCTGCCCAGCTCCTGTGCCAAGGCGGGGACCGAGTGCCTGATCTCAGGGTGGGGAAACACGCTGAGCAATGGCT
Seq A exon
GTGAGTATCAACACGCGCAGCAAGTACCGGTTTGCGCTTCTCCCGCTCTAGCACCGCGTTCGTGAGACCTGACGTCTTTCCTTGTTCTGCCTGCAAAGTCACCACGCTGCCCTGCCAGTGTGCCTCAGTATACAGTGCACTTCAAATTTGCTCCTGTAGCTTAAGGGTTTGCTCTACCCTGCTTTGCTGGATGGCTCTCGCAGATAGGTCTTCAGGTCTTTTTGTTAAGTGACAGAACTGGGTCCCAGGAAAAAAACAAATGTTGTCGCTACTCTCCCGGTAG
Seq C2 exon
ACAATTACCCTGAACTTCTCCAGTGCCTGAACGCTCCGATTCTGAGTGACCAAGAGTGCCAGGAGGCCTACCCGGGTGATATCACCAGCAACATGATCTGTGTCGGGTTCCTGGAGGGTGGGAAAGACTCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014755:ENSGALT00000030486:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(49.1=98.8)
A:
NA
C2:
PF0008921=Trypsin=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTATACAAGTGAGGCTGG
R:
CTCAGAATCGGAGCGTTCAGG
Band lengths:
301-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]