GgaINT1022744 @ galGal4
Intron Retention
Gene
ENSGALG00000001842 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
AADN03011125.1:1360-2063:+
Coord C1 exon
AADN03011125.1:1360-1504
Coord A exon
AADN03011125.1:1505-1802
Coord C2 exon
AADN03011125.1:1803-2063
Length
298 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CCTCCCCGCTCCATGCCCAGCTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GCGCGAGCCCTCCGTCCGCGTGGTGCTGGGAGCGCACAGCCTGGAGCAGCCCGAGGAGTCCCAACAGGTTTTCGGTGTCGAGGAATCCATCGCGCATCCCCTCTACAACCCCCGGACGGTGGACAACGACATCCGCATGCTCAGG
Seq A exon
GTGAGCCCCGCGCCCGGTGCCGCGGGCTGGGCTGGGGACCGACACTAGGTGTCAGTGTGCTCCGGAGAAGCGCTGCCCCCGGGATGGATGATGCCCGCAGTCCGGGCACCCCAAAGCCTCCGGAGCGCACTGGTTCTATTTGGAAGGGCCGGGATACGGGAGCGCGCTGGGGGCTCAGCAGGGCAGTGGGAACCGGGCTAGGGGCGCAGGAGCAGCGGGGAGGGGCTCTGCCTTGGGGTCTGTGTGGAAGAGGAAGGGAGCCGTGCCCCCTCCCCCCCCCTCCCCGCTCCATGCCCAG
Seq C2 exon
CTGAACCACACGGCCACGCTGAACGCATTCGTGAAGCGCATCCGCCTGCCCCGGCCACGCATCGACCTGAAACCCGGCACCCTTTGCTCCGTGGTGGGTTGGGGGGACATTTCCAACTACGGCGAGAGGCCCATCCAGCTGATGGAGGCCAACACCACCATCGTCAAGAGGAGTCTGTGTCGGACCCTATGGAAGGGCCGTGTCTCGGGCAACATGCTGTGCGGGGCCAGCCGCAATGCCACGCTGCAGGGCGTCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001842:ENSGALT00000002851:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAACAGGTTTTCGGTGT
R:
GAGACACGGCCCTTCCATAGG
Band lengths:
294-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]