GgaINT1022876 @ galGal4
Intron Retention
Gene
ENSGALG00000028529 | PTGDS
Description
prostaglandin-H2 D-isomerase precursor [Source:RefSeq peptide;Acc:NP_989590]
Coordinates
chr17:509396-509676:-
Coord C1 exon
chr17:509575-509676
Coord A exon
chr17:509422-509574
Coord C2 exon
chr17:509396-509421
Length
153 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGCTTTTCTTCTTTCTGCAGACA
3' ss Score
11.35
Exon sequences
Seq C1 exon
GCCGCACCAAGGAGGTTGCACCCCAGCGCCTGGAGAGGTTCATGCAGTTCTCCCAGGAGCAGGGCCTGAAGGACGAGGAGATCCTCATCCTACCCCAGACGG
Seq A exon
GTAAGGGTGGGCAGCTCACAGTGGCTCCTGGCCATGCTCAGCCCATAGGGATGGAGGGAGGAGGTGGCGGCCCTTGGAGGGTTGTACCAGATCCTAGGGCAGTAGTGCCTCTACCCATGGTGAAGCTGATCTCTGCTTTTCTTCTTTCTGCAG
Seq C2 exon
ACAAGTGTATGGCAGATGCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028529:ENSGALT00000014675:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(23.8=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGGTTGCACCCCAG
R:
CAGCATCTGCCATACACTTGT
Band lengths:
116-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]