GgaINT1023198 @ galGal4
Intron Retention
Gene
ENSGALG00000001002 | RABEPK
Description
Rab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]
Coordinates
chr17:9588798-9589015:+
Coord C1 exon
chr17:9588798-9588856
Coord A exon
chr17:9588857-9588933
Coord C2 exon
chr17:9588934-9589015
Length
77 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCGCCCGTCGCTCCCCCCAGGTA
3' ss Score
10.26
Exon sequences
Seq C1 exon
ATGGGGCCGCGGGTGCTGCCGCTGCTGGAGCCGGGCTGCCGCCCGCAGGCGGGCAAGTG
Seq A exon
GTGAGCGGGGGGGGACGGGGCGGCGCGGCCTCGACTGTCTCTCGGTGCGGCTGAGCACCGCCCGTCGCTCCCCCCAG
Seq C2 exon
GTACCGGATGGCACCGCGCGGTGAATGGCCCCGCGGGCGCGTGGGCCACGGCTGCCTCTTCGTGCCGGGCGGGTCGGGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001002:ENSGALT00000001479:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]