GgaINT1023361 @ galGal4
Intron Retention
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30902156-30902661:-
Coord C1 exon
chr2:30902597-30902661
Coord A exon
chr2:30902240-30902596
Coord C2 exon
chr2:30902156-30902239
Length
357 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TCCTTTTGTGTTCATTGCAGGTT
3' ss Score
11.42
Exon sequences
Seq C1 exon
ATTTCCCAGATGCTGAGATGAATGAACAAGCACTGCGCTGTACAATTATGACAAACCGTGTTAAG
Seq A exon
GTTTGTATTCAACTGCTGTTAGTCGTATAGTCCCAGTGGTTTGAATGCCGTTCTGTACCGAGAGGAAATAACAAAACAAGCTGTGCATTTTTATGCTAATGAAAATGTTGAAAATAAGAGGTGATAGCTTTTTAAAAGGAAAAAAAGAAAAATAGGAAAGCAGAATATGGCATCTTTTTAACATAACTCACAGAAAACCACTGCAATAGGACAGATGTTTTACCCTTAATATATAATTAAAGTAATATTTCACATACTGGAAAGGAAGTTGCTCGTTATTTATGGCAACTGTGGGCCTTAGACTTAAGATTCAGTGTCTTTAAGGTGGCTTACGTTTTCCTTTTGTGTTCATTGCAG
Seq C2 exon
GTTTCTCTGGGAGAACTAGGTTTAAACCTGGCCACTAAAAGGTGGAATATTTACCTCTGCAGAGTTATTGCACCTGGCAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910:ENSGALT00000017745:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]