GgaINT1024321 @ galGal4
Intron Retention
Gene
ENSGALG00000009060 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr17:381668-382123:+
Coord C1 exon
chr17:381668-381756
Coord A exon
chr17:381757-382055
Coord C2 exon
chr17:382056-382123
Length
299 bp
Sequences
Splice sites
5' ss Seq
GAGCTGAGC
5' ss Score
0.43
3' ss Seq
GCCAGACTTTGTGTGTTAAGACC
3' ss Score
0.92
Exon sequences
Seq C1 exon
CAGAGGGTGCTGGCTGCACCCTGCGTGCCTTGGCGCCGTGGTGCTCAGCAGCAGGGCGGTGCTCTGACAGCATGTCCAGAAACACAGAG
Seq A exon
CTGAGCTGGCTTGGATGTGGCTGCAGGGCTGCCTTTCTGGCAGGGCGTGCAGCACGGGGGATGTGCTGACTTGGACAGGTGCTCAGCCCATACCTGCTTCAGCACACAGTCATCTAGCGCTGGCAGGAGGCGTCTGATCCTGCTCGAAACGTGCCAGCCTGAACTTAATCTGCAGAAATAGGTTATGTGTGGATTTGGACCGGTGTCATGTGTTTGTAGTAGATCGGCCTTTTGATAAATAGGATGTTGGGATTTTAATAAAATTTTGGAAACCCTGCAGCCAGACTTTGTGTGTTAAG
Seq C2 exon
ACCACAGGCATGGAGCTTCTGGTGTGCGTCATCTCCTCGGACAACGGACACACATCTGGGTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060:ENSGALT00000014746:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]