GgaINT1024431 @ galGal4
Intron Retention
Gene
ENSGALG00000014116 | SCAMP5
Description
secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
Coordinates
chr10:1883740-1884273:-
Coord C1 exon
chr10:1884211-1884273
Coord A exon
chr10:1883813-1884210
Coord C2 exon
chr10:1883740-1883812
Length
398 bp
Sequences
Splice sites
5' ss Seq
GCTGTGCGT
5' ss Score
3.77
3' ss Seq
GTTCTCTTCCTTCCCTCCAGCTC
3' ss Score
10.85
Exon sequences
Seq C1 exon
CTGCGGCAAGAGCGGCGCCGGGCGGCCGCCGCCACCCGCGACGCGACGCGTGGGGCCGGTGCT
Seq A exon
GTGCGTGGGGATCCGCTCTTGACGGCCCGGGGGCGGGTGGGAACCGTCGTGCAGCGCGGGGAGGGCCCCGGGAGGTCGCCGGAGCCCAGTGGGGGACGCGCCGCGTGGGTGTCCCCGCGCTTTCCGTGGGTTTTCGCCTCCCGGTGAGGCCGTTTCCGTGCGGGGATGGAGCTGAAGAAGCCCCGCTGCTGTGCGTGGGCCGAACCCCGCGGCTGGAGCCTGTGCTAATCGGCAGGGCGCTAAGCGGGGCGGGAGCCGGGATTGAGCCAGGTGTCCGCGCTAAGCCGGGCCTGTGCTGCGGCCGGGGGGAGAGGGGGGGAGTTTGGGGAATGAGGGCAGCTGGGGTGCAGCCGCACTCCCCTCAGTGCCTCCGTCTGTGTTCTCTTCCTTCCCTCCAG
Seq C2 exon
CTCTGACGCAGCTCCCGGCTGCTTTCCCTCATCTCTGCAGAGCGGGGAGGCTGACAGTGTGCCAGCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014116:ENSGALT00000022849:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]