GgaINT1024741 @ galGal4
Intron Retention
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22631427-22631722:-
Coord C1 exon
chr6:22631574-22631722
Coord A exon
chr6:22631490-22631573
Coord C2 exon
chr6:22631427-22631489
Length
84 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TGGTACTTCTCCCTGTACAGATC
3' ss Score
8.9
Exon sequences
Seq C1 exon
AGCTGTCGGGTGTGCGGAGGTTCAGCGGGCGCAGCCTGAACTACACCACGCTGCTGCTGGAGGACGAGCGGGGTGTGCTGTACGTGGGGGCCAGGGGGGCCGTCTTTGCCCTCAATGCCAGCAACGTGGCCGATGGCTCGCACCGCATG
Seq A exon
GTGAGCTGGTGCCCCCCATTCCCAAGCAGCCTCCAAACTTTTGGAGTGGGGTTTCATGCTGTGATGGTACTTCTCCCTGTACAG
Seq C2 exon
ATCCATTGGGAAGCATCTCCAGAGAAGCAGCTGGACTGCCTGCAGAAGGGCAAGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957:ENSGALT00000044069:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(8.1=70.0)
A:
NA
C2:
PF0140314=Sema=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACTACACCACGCTGCTG
R:
TTGTTCTTGCCCTTCTGCAGG
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]