GgaINT1024912 @ galGal4
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr15:7129235-7131267:+
Coord C1 exon
chr15:7129235-7129372
Coord A exon
chr15:7129373-7131070
Coord C2 exon
chr15:7131071-7131267
Length
1698 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GACCGAGCTCTTCTTTCCAGCCT
3' ss Score
4.34
Exon sequences
Seq C1 exon
CCACGTGCGGGGGGAGCTGACAGCCATGGCCGGGGTGATCCTGTCCCCCAACTGGCCGGAGCCCTACACGGAGGGTGAGGATTGTATCTGGAGAGTCCACGTGGGTGAGGAGAAGCGGCTGTTTCTGGACATCCAACT
Seq A exon
GTGAGTTGCTCTCAGACATCGGCGCATGTCCTGCCCCTGGCCCTTACCAGCCCAGTTCCCTCCAGCATCCCCCTCCCAGGGCCCAGCTCTGTGTCTGTTCTGCCCCTTCTGCCCTATTCTCATCCCCTGCAATATGCTCAGTACCCGTTGCGCTGCAGCACTCATTGCACTGCAGCATCCATCACTTTGCAGCACTCATCACATTACTGCACTCGTTGCATTGCAGCATCCTTTGCCTTGCAGCACCTATTGCATTGCAGCACCCACTCCTCACTGTATCCAGAGGTAACTCAAAGAGGAATGGGTTTTGTCTCCAGGCAGGGAACCTTGGGCATGGTAATGCTGCTTATGCAAAGGGAATCTCCAAAGTGCTATTTTGGGTTTTCAAGAGGAGGGCATGTCTCAAGTAGGGGCTTAGAGTCAAAAAGGCTTTAAAGCTTTCTGTAAAAATCACAATTCAGAGCTCCCCGTGAGGCTCTGCTGGATTTGTGGGCTCTCGGGCTGTGCAGGACTGGAGACCAGGCGATTTGAAGTCATCAGACATAAATGTCACCGACAAAATCATGTTTGACAGAAAGCAGAGATTTACTACAAATGTCAGCTTGCCATGGGGATTAACTGGGAGCCTTCCAAGAACATTCTTAATAAAATGTTCGGGGATGGGCTCAGGCATCTCCAAACAAGGCTGAATCAGATGGGTGGATGTGTGGGGTGGGGGTCCCACTGTGCCTGAGCACACCCTGGGCCTGGGGCGCTGAGCAGCACGGTGGGATGGATCCTGCTCAGCACAGGGCTGGATGTTCTGGCTCAACTGGGCACAGAACGGCACTGGGCTCAGCCCCAGGGCTGTATGAGGACGTTTGCTTGGGCTGTTGCAGGGGACATTGCACAGGCCATTGCATTGGACGCTGCACGGGCCATTGCATGGGACATTGTACGGGACATTGCATGGGATTTTGCATGGGACATTGCACGGGACATTGCATGGGATTTTGCATGGGATTTTGCATGGGATTTTGCACGGGGCATTGCACGGGACTTTGCATGGGATGTTGCATGGGATGTTGCATGGGACATGGCATGGGATACCCGGAGCCCAGGCTCGGAGGGGGGGTTGCTGCCGCCTCAGACCTGGTGCCGACTTCTCCTGCGGGCTCCGCTCCATCCGCGGGGCAGCACTGCTCTCTGCTGGCGGCGGGGACGCGGGCGGGCGGCTGCCAAAGCGGATCGGTTCCGGCACCGGGAAGAGCTTTGCTGGGGCTGCTGCTGCTGCCGCCCAGAACTGCAGCGCTGCAGTCACCGCGAGGGTCACCGCTTGTCTCACGGGGCCGCTGTCACTCCCCACGGGGATCTCGGCTGAAATCTGTAAGCTGTGTTCTGCGGGTGTCCTTGGGAGTCCCATGCAGCTCCAAAGACTATGGGGGGCCCGGAGTAGCGGGGCAAAGCCTCTGCTCCTTCTCAGTGCCTGCAGCAGGGAGAGTGGTCTGGGGGCTGATGATGGGGCCAGGGCTGAAGGAGCAGCACTGCTGCTCTGTTCAGAGCAGGCATCCCCACAGCACTTCCCAAGCCCCTGGGGACAGGACAAGCCCCCAGACAGGATGCATGCAGTGTCAGGCAGAAGGTCACCTCACTGCCCCTTCGTCCCACACGCAGCATCCTGCTGGTTCCCTGCCCAGCTGACCGAGCTCTTCTTTCCAG
Seq C2 exon
CCTGAACCTCACCAACAGCGACATCCTCACCATTTATGATGGGGACGAGCTCTCTGCCCGCATCCTGGGACAGTACGTTGGCAGCAGTGGCCCCCAGAAGCTCTACTCCTCCAGCCCTGACCTCACTATCCGGTTCCACTCAGACCCTGCTGGGCTCATCTTTGGGAAGGGCCAAGGATTCATCATGAACTACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(41.1=100)
A:
NA
C2:
PF0043115=CUB=PD(57.1=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAGCTGACAGCCAT
R:
CTATGTAGTTCATGATGAATCCTTGG
Band lengths:
326-2024
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]