GgaINT1025528 @ galGal4
Intron Retention
Gene
ENSGALG00000013303 | SLC27A1
Description
Gallus gallus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001039602]
Coordinates
JH376279.1:57088-58131:-
Coord C1 exon
JH376279.1:57970-58131
Coord A exon
JH376279.1:57158-57969
Coord C2 exon
JH376279.1:57088-57157
Length
812 bp
Sequences
Splice sites
5' ss Seq
ATGGTTGTG
5' ss Score
-7.21
3' ss Seq
GCCTGTTTCTGCTCTTCCAGATC
3' ss Score
10.51
Exon sequences
Seq C1 exon
CAATAACCGAAGTGAATGGCATGCTGGGGAAGAACATGGCCAAGTTCTGCTCTGGTGACTACAACCCAGAAGTTGTTCCTGCAGAGACCAGGCACTTGGATCCTCTTCTGAGCACCGCATCGAAGTCACCACCAACTCAGATCCCGGCCAAAGGCTTGGATG
Seq A exon
GTTGTGTTATCAGCAGTCTCTATTTCTTAGTGGGATGTCCATAAGAATCATAGAACCGTAGAATCATCAAAGTTGGAAGAGACCTCAAAGAGTCCAACCATCAACCCATCACCACCATGCCCACTAAACCACACCATGTAGAGCTGGGCTAGGAGACAGCAAAAGAGAGATTAAATCAACCCTGTTTGGGGTCACAGATAGAAAAAGGAAAACAATAGGGAAAAGGAACAAAATGTAAGATTGTGGTTGCAGGGTATTCTGGATTAAGTTTCTCAGTAGCTGAGATTTGCAAGGAAACAAAATATAAGATCCAGGTTTGAAGGCATTCTGGATTAATCTTTTCCATAGCTGAGGTTTCCATGCACATCTGAGATCAATCAGGCGTGAGATTCCCATCTAGGAATTTGTTTCCCATGGAGGAACAGTGGCGTGGAAGAGGCTGGAGGCATTTCTTCCTTTAGAGTTTTCATTGCAGGGCCTCAGGTATCTCAGCTTTTCCTCTAGATTGCTTCGGAATTAGGGTTTGAGCTGGAGAGCTCATCAAATTCCAGGGCCATTTGCATAGAGGTGTGTGGGTCTCATCCTCGGAGCTCTGCAGACTCTTTGTATGTGTTTATTTATTTACCTCTATGGACAACATCCAGACCTTCTCCTAGGGGTATACCTCAACGCCCGCGTCAGCCTTTGAGCTCTGTGGTCAGCGCCCATCCTCAAGTGCTCTGATCGGAACAAAGCCTAAAAGCACCTTTTTATGAGGGGTTTTCTCAGAGAGCTGAGGTCAGTCGGCCTGACGCCTGTTTCTGCTCTTCCAG
Seq C2 exon
ATCGTCTCTTTTACATCTACACTTCGGGTACGACGGGAATGCCCAAAGCTGCCATTGTGGTGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013303:ENSGALT00000021722:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCGAAGTGAATGGCATGCT
R:
CTGCTGTGCACCACAATGGC
Band lengths:
230-1042
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]