GgaINT1025531 @ galGal4
Intron Retention
Gene
ENSGALG00000013303 | SLC27A1
Description
Gallus gallus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001039602]
Coordinates
JH376279.1:55697-56811:-
Coord C1 exon
JH376279.1:56702-56811
Coord A exon
JH376279.1:55790-56701
Coord C2 exon
JH376279.1:55697-55789
Length
912 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CTTTGTGTTTGCTGCTTCAGATT
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTAACATCATGGGAGTTGGCCAGTGCCTCATTCACGGCCTCACCGTGGTCATCAGGAAGAAGTTCTCTGCCAGTCGCTTCTGGGATGACTGCGCCAAGTACAGATGCACG
Seq A exon
GTGAGGGCTCTGCTGGCTCGCTGCTTTACCACCCATCTCTGCATGATCCCCTTGTCCCAGAGCCGTGGGAGGAATCAGTACGGTTTGATATTGGTTGACGTAATGAATGGAATTAGAAGTGTGACCTCAATAGGTGGGATTTCGAAGAGAGATCCCAAGCGCTGCCCCTGAGCTGTAGTTTGGACAATTAAAATCCTCGTGTATCTCCAACAATCTGTTTTATTCCCTTTACTGAATCTTTCAGTGGGTTTTGTAGAAATATTCCCCCCTCACGATATTCTTGGTGCTTGATAGAAAATAACAAGGCTCTGATAAAGGGAGAGTTTCTGTCCCCGGTGAAGGCAGCGGTAGAAATGCAGTGTGTTTCAGGATATGATGGAATGGAGTACAAACACAACAGCTTTTAAATCCAGCACTTTGGTAACTTCAGCCTCAGGAAGAAACAACAGCATCCAAACTAACCTTCATCAGTTCTCTATAAGGTGTGCTGTGGTGTGATTGAACTGCCAGTGCCATCGTAGGGATGTAGGATCAAGGCTTAGGGCTGTCTTTCACCCATCCTCACCTGCTCGCTCTACAGAATCACCAAGGCTGAATCTTAGAACACAGACATCTGTTGTAATTGGGGGAAAGGTCTTTGAGAACTTGAGTTCTCTTGGCAGCTCGTTGTCGCTGAATACTTGCTTGTGTCGGTGCCAACATCACCTACTAATTTAAGCAGCTCTTTCTCCTTCCTGGTGTTTATCTTACCCTTCTCCCATAAGGAATATTTATAGGTGGCAATTGGATCCCCACTCAGCATTCACTTTGTGACATCCAGCTTTTGCTTACAGCCGACCACTTGTTTCCCCAGTCTTCCCGGAGCGCGCCCAGAACCCATCCTGAGCGATGTCTTTGTGTTTGCTGCTTCAG
Seq C2 exon
ATTATTCAGTATATCGGGGAAATCTGCAGGTATCTTCTGAACCAGCCAGTCCGAGAGTCGGAAACGCAGCACTGCGTGCGGCTGGCAGTGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013303:ENSGALT00000021722:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCATGGGAGTTGGCCAG
R:
CAGTGCTGCGTTTCCGACTC
Band lengths:
182-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]