GgaINT1025687 @ galGal4
Intron Retention
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:287451-287963:-
Coord C1 exon
chr2:287750-287963
Coord A exon
chr2:287667-287749
Coord C2 exon
chr2:287451-287666
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGC
5' ss Score
3.55
3' ss Seq
GTCCGTCCGTCTGCGCGCAGCGC
3' ss Score
8.85
Exon sequences
Seq C1 exon
CAATTCCACGAGGCCGCCTACCTGGCGGATGACCGGCACGACCTTCTGACGGCCATCAATGAGTTCCTGGACTGCAGCGTGGTGCTGCCGCCCTCCGAGGTGCAGGGCGAGGAGCTGCTGCGCAGCGTCGCACACTTCCAGCGTGAGATGCTGAAGAAGCGCGAGGAGCAGGAGAAGAGGATGCTGCTGGAGCCCAAATCTCCCGAGGAGAAGG
Seq A exon
GTGTGCTGGGGCACAGCGGGGCGGGCGTGGGGTGGCCGGGGCCAACCGTCCAGCTGGCCAACCGTCCGTCCGTCTGCGCGCAG
Seq C2 exon
CGCTGCTGAAGCTGAAGGTGGCTGAGGATGAGGATGAGGACGATCCCCTGCGGCGCACGGGGCGGCCCTTCGGGGGGCTGATCCGGGACGTGCGGCGCCGGTACCCCCATTACCTGAGCGACTTCAGGGATGCGCTGAACCCACAGTGCATCGCCGCCGTCATCTTCATCTACTTTGCCGCGCTGTCCCCGGCCATCACCTTCGGGGGGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756:ENSGALT00000043503:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(15.5=50.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(28.1=78.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGTTCCTGGACTGCAGC
R:
CTCAGCCACCTTCAGCTTCAG
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]