GgaINT1025691 @ galGal4
Intron Retention
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:286320-286742:-
Coord C1 exon
chr2:286527-286742
Coord A exon
chr2:286410-286526
Coord C2 exon
chr2:286320-286409
Length
117 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGT
5' ss Score
7.91
3' ss Seq
TGAGCCCATCCTTGCAACAGATC
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATCTTCCAGGAGCACCCCCTGCACGGCTGCGCTCAGCCCAACGGCACCACGTGGAGCAACGGCACCGCGGCACCCAACGGCACGGCGCAGCGCGGGGCCGCCAAAGTGACGGGGCAGCCCAACACGGCGCTGCTCTCCCTGGTGCTCATGGCCGGCACCTTCTTCATCGCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGCTTCTTCCCCGGACGG
Seq A exon
GTGCGTGGGGCAGGCGGGACGGCGGCGCGGGCACGGGGTGAGCCCGGCTTTGGGGGCACGGGGAGCCCGGGGGTGGTCGGGGAGGTCGGGGCCGGGCTGAGCCCATCCTTGCAACAG
Seq C2 exon
ATCCGGCGCCTCATCGGGGACTTCGGGGTGCCCATTGCCATCCTGGTGATGGTGCTGGTGGACTACAGCATCCGCGACACCTACACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756:ENSGALT00000043503:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(14.8=41.7),PF0095516=HCO3_cotransp=PU(19.2=77.8)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACGTGGAGCAACGG
R:
GATGCTGTAGTCCACCAGCAC
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]