GgaINT1025738 @ galGal4
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39023045-39023300:-
Coord C1 exon
chr2:39023202-39023300
Coord A exon
chr2:39023097-39023201
Coord C2 exon
chr2:39023045-39023096
Length
105 bp
Sequences
Splice sites
5' ss Seq
ATTGTGTGT
5' ss Score
0.52
3' ss Seq
TTAATTCTGCCATTGTTTAGGGA
3' ss Score
7.04
Exon sequences
Seq C1 exon
CCCTGAGAAACCAGAAAGTGTGAAAATAAATGTGGAAGATTCACCTGTTGTGAAATACGTGGATGCTGAAACATCTTTATAGAACTGAAACAGGGAATT
Seq A exon
GTGTGTATTTGTGTGTGTGTATATACATCATTGTAGGATATTCTACCATTGAAGTGTGATTTCCAATGTAAGGAGTAACATGTATTTAATTCTGCCATTGTTTAG
Seq C2 exon
GGAACTGTAGATATGCTGACATGAGAAGATTTTCCTGCAGATCATTTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGAAACCAGAAAGTGTGA
R:
CACTCAAATGATCTGCAGGAAAA
Band lengths:
151-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]