GgaINT1027742 @ galGal4
Intron Retention
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2373631-2374447:+
Coord C1 exon
chr27:2373631-2373798
Coord A exon
chr27:2373799-2374351
Coord C2 exon
chr27:2374352-2374447
Length
553 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
ACCCTGACTTTCTTTTGCAGGCC
3' ss Score
11.99
Exon sequences
Seq C1 exon
CGGCGAGTGGAGCAGCCGCTGTATGGGGTAGACGGCAGCACAGCAAAGGAACCACAGGAGGATCACTCTGCTCTGCCAACGCTGATGTCGGTGATGCTGGCGAAACAGCGGCTAGAGAGTGAGCAGCTGGCACAGAGGGGAGGTGGCCTCTGCTTTACTTTTGTCTCG
Seq A exon
GTGAGCAGCTCTGAAAGGACTTGAATGCCAGGGGATGTTTCTAGTTAAGGGATGGGGCATTTGAAGGAGCTCAAGTGCAGCCTGGTTTATTGATGACCAAGTCTACCATCTTCTGGTAAGTTCTTCCTTGTGAAGAGTTCTAGGTCCCAGGCTTTGCTTGTTAATAAAATGAGTTGAGTTTTAAGTTAACAATTTAAAAATCTTGTGTAGATCGAAACCGTAGTATGACTGCCTGCTTGACTGTGAAAATCAAAAAGAATGGAGTACAGCCTTGCTTTTAGAAGTGTAAATTTTGGGCTAGCTTAATCTCAGCTGACATGAGTTATACTAGGTTTTTTAAAAGCTTTGTCTTTTAGCAGGTTGGGCCACACTTCTTCAGAGCAGCTGATTCTCTTGTGTTAATAAACTAAGTCTCTAGAGCATTCTTAAACCTTAACACAAAAGTATGGTACCCAGGCCAGATTACACCTCCCATGAAAAGATAAGTGTATCTGCATGGGCACCAGCAATCATGTTGAGGAGCATATAACAATACCCTGACTTTCTTTTGCAG
Seq C2 exon
GCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410:ENSGALT00000000559:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGTATGGGGTAGACGG
R:
GTGACTGTTTGTGCTGGATGGA
Band lengths:
247-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]