GgaINT1028428 @ galGal4
Intron Retention
Gene
ENSGALG00000009014 | TRAF2
Description
TRAF2 protein [Source:UniProtKB/TrEMBL;Acc:E1BTY1]
Coordinates
chr17:546624-547178:-
Coord C1 exon
chr17:547100-547178
Coord A exon
chr17:546723-547099
Coord C2 exon
chr17:546624-546722
Length
377 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ATTTACCCTTTCCATTGTAGGCT
3' ss Score
10.42
Exon sequences
Seq C1 exon
TTCTGGACCTCAGAAGTGTGCGAGCTGCATTCAGGAAGGAATATACGAAGAAGGAATTTCTATTTTGGAAACGAGCTCT
Seq A exon
GTAAGTAAAAATGCATCAAAGAGTGAAAAATCCCCATTGCAGCTACCTGTAGTTTCCCTTTAGAACACCAGGCTTCTGGGGTCCGCGTGCTCTTTGGAAATGTTCTGTTGAGCAGTGAGAGTTACAATTAACGAGGTGAACTCCCCAACTTTAAAATCCAGGTCATGGGAATATAGCAGTGACCTACTTAAGTGCTGTAATAAAGATCTGTTTGCCATTAGCACGCCTCTGAGGATGTGGCAATGGGCGCGGGGAGGAGTCTTTTATTTATTTGTTCTATATTTTTGTTAAGAATGGTTAATAAAGAACAAAGAGGCTGGACTGTGTTTGCACCCCCTCCCTATGATTTCTGTGTTCATTTACCCTTTCCATTGTAG
Seq C2 exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014:ENSGALT00000014665:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]