GgaINT1029637 @ galGal4
Intron Retention
Gene
ENSGALG00000015624 | VCAN
Description
versican core protein precursor [Source:RefSeq peptide;Acc:NP_990118]
Coordinates
chrZ:62501335-62509068:-
Coord C1 exon
chrZ:62503552-62509068
Coord A exon
chrZ:62501449-62503551
Coord C2 exon
chrZ:62501335-62501448
Length
2103 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTATTTTTCTACTTAACAGGAC
3' ss Score
9.12
Exon sequences
Seq C1 exon
ATCATCCGGTGAATGAGTTTTTGGATCTGTTCAGTCGCCACATTCTTCCTCATGCAGTAGATGAGACCCATACTGATGCAGAATCAGCTCAGACTGAACCCTGTACTTCAGACTCTGTGCAGGATTCGTCTGAATATATAATATTGGATCCTTTCTTTCCAAACTTTATGGACTTTGAAGAGGAGGAAGAGGACTGTGAAAATACTACTGATGTTACAACTCCTCCAGCTTTGCAGTTCATCAATGGAAAGCAACAAGTGACAAGTGCACCTAAAAGCACTAAAGCTGAGGAAGCAAGAAGTGACCAAATTGAAAGTGTTGCACATTCAAAAAATGTAACTTTTTCACAAATCAATGAAACAAACACCTTCATAATATCTGAAACAGAAGCTTCTGGTACAATGCAGCCAAGCAAAGCTGGAGAAGTAATGGGGGCATTTGAAGTCACACAGCCGACAGCAGATGTTGCAATGTTAGAACCAGTATATAGTGGTGAGTCAGAAGTTACCACAACAGACAAATATTTAGAGATTACGTCTGTGTATGAGCAGTCACCACAAAAAAATAAGGAGACTGTAATGTGGCATGGAACTGAGGAGAGCTCTACCAAAGACACAAAAAACTTGCTTTTGATCACTAATGAATCTTCTGGAGATGGCTCCACTGAATCTGATTTGTCTAGGTCTGTGTTCACAGAAATTTTGACAATGTCAAGTCATGAAGATAGTGAAAAAATTTCTCATACAACCTCTGTTCCTACTATCCTTTCTGTGGAAAGATCTGCAGTAACTGCTGCTCCGAGTGCAGATTCTGATACTGCTACTGTAGGCATAGATGTGAAAGACCTTATTCCAAAAGGTGGGACCGCTACTCCAGGAAATTACTATAAATCGACTATTAAACTTGATGCAGAATTCCCTTTTGAAAGCAACCCAGAAGCAACAAGTCATACAACAAAGCCTGACATGACTGCTTCTTCTTTTATAGTTCTGGAAGGTTCTGGAGATGTAGAAGAGAACAGCACTTTAGCTTCAGCCATGACAACAGAAACAGCAGTTGCAGAAACACTTTCAGTGCAAGATACTTCTTTGGGTTCTGGCACAGTACTGCCAACAGAAATTTCTGTAACCATTTCAGAAATCACCCCTGCTTTGCCTGGAGGAACAAGAATTCTTTATTCTACTTTTGATCAAAGTTCTGAAGCAACTGTTTCCACCAATTTTGTGTCTGAATTAATTATGGAGCAAGTAGTTGGCAGCTCTGTTGCAACTGAAAAGAAAGTTGAAGATGAAAAAGAAGTACAGACTACCGTTTATTCGAGTCAGGAAATTTCAACCACTGATGCAAAAGGAAAATCAGAACTGGATGAGTTTGGAAGCACTACTAATGAAGTCAGAACTGTAAGTCAGGAACCCACTCCTCTCAGAGAAATAGTACCAATAACAGGTACCATGCATTCTGAAATCAAAAAGGTTACCGCCACTCCTTTCTTGAGAGAGAAGCTTTTTATAAATGAAGGATCAGCTGAAGAACCAGCAGACTTATTTGCAGGGAGTCCCACAAGAAAAGTGGTAAGTACTGACTCCCCATTTACTGATTCAGGTTCTGGAGACATAGATGTTATCACTGAGTCTGCTACTTTGACTTCAGTTCCATCAAGGTCTGTCATAGAAACACAAACAGTAAAACATGAAGGAAATATTAATGTCATCAGTGTTTCATTGAAGAATACCACAACAGAATATGAAGAGCACATAGGAACAGGTGGACCAGTGACATCAGTTTCAAGTACTGGATCAGACGGCTTGACAGAGGAGTCTGAAGTAGCAATTGAGATGTCTGAGAATGTCTTTAGTACAGAAAACCAAGGAGAACCAACACAAGAAGCAGTACCAACTTACACAGCTCCTTCTGACATCAAATCAAGACTTGGTTCTAGAAGAGAGGTAACATCCCATGTTACACCAGTAATTAGAACAAAGGATTTAGAAACAGCTGAGGTCACATCATCTCCAGAATCAGTTGTGAATAACAGCACTCTTGACACCATGGTGACACATGGTACCATAAGAGCAGTAGCTGAGTCTACAGAAAGCAAAAAGGGAAAAGGTAGCTTTTCAGCTGTTTCTTTGGGCAAAATTCTAATGATTGAGCATGGCTCTGGAGAAGAACTCAAAGTTGACAGCAGCACCACAAAATTAATGTCTAATGGACCTACGGAAAAACTGCTTGGAAGCCATTTTTCATTTTTTGACCAGGGATCTGGTGAAGCAGAAACTTTAACTGAATCATTTACAAAAGCATCAGTTTCACCCACTGGGAAACCAGAACCACAGGAGCAGTATGGCAGAAAAACTGTCAGCATGCCATCCGCTGTGGTTCATGCCTACACTGCTGAACCTAATGAGCTAGTTACAAGTACTGAACATGACATAACCTCTTTGCAAACTGTAACTGATACAGAAATGGAAGAGAAAGCAGCTAATGAGCTCACAGTGACATCTTTTGCTACAAATCTTCCTTTGTCAGAAGATGTGCATTCATGGGAAGACAGGCCAAGGGAAATTTTACCAAAAGCAATAGAATCTTCTGGAGAAGCAACGGAAGATCCATTCTTCATAAGTACACAGGCTAACCATGAACATGTGGAATTTTTAAGTGTTCCCACTATCAGACCACACTCAGAAGAAAACAAAGTAGAAGCTGAATCTGATGAAAAAATATTGTTGCCATTTAATAATGACAGAGTTACTGAGTCTGCAGTAATTGAAAGGAAATACTTAAGTTCTCCAGTTACAGATACAGAGCAGGAGGAGGAGTTGGTACAAAATATTTTTCCTACAGAAGATATTCCCAGATTATTCCTGACACCTAAGGAAGAAAAACCAACAAACAATGAGCTCATCAGTGATCCATTATTTTCAGGACAAGGATCAGGAGATGAATTTACTGTTATTCCTTCAGTAGAGTCATTGGCTGTGAAAGAAACCACAAATACTTTAAGTCCTTGGCCTTTTCATCCTGCAAGTGTAGGACCTCAACTTTCCACTGACAAGACACAAGTCTTTGAAAGTGGAAGCACTGACTCAAATGCTGAAATTAATGAAGAAATTACAACTACTGCAGCAGAGCTGCTGACAGAAACTGCATACTCAATGGCCACCAGTTCCCCAGCTTTAGAAGAAGAGAGCTCCAGTCACTCCAACTCTAAAGACAAAGATATTACACATTATTTTCTTGTGATTGAAGACCCGTACAACAAGGAAATGGACCATAGAAGGGGAGAAAATGGAACGAGCAGGCCACTACCTACTCCTGGAGATGTTTCTCTTGAGGAATCTTCACATATGCTGACTACAGATGACGTAACTCCTGTTTCTGTAATACTGAGCGAAACTCCTTATCTTGAAATGGGAAAATCTCTTGCAACATCAGCAACAAAAATGCCAAGCAGAGTATTACCTGAAAGTTCTGGAGAGGGATCTGGCTGGGATGGTGTTTCAGATTCATTTGCCCCTGATACATTGACTCATTCAACAGCACCTTCTGTGATGGAAGTTGAACTAACTGCTTCATCTCATATTCCTGGGGTTTATTCTGAAGTTATGACAACACATGTACCGGGAGATGGATCACAGACTGTAATCACAGGATTAGCATCTCTTTTTACAGAAGAAAAAGAGATTGTGGCAAATCAAACTGCTGCTGATCCAAAGACAGGTACATCGGAAGAACTGACGAGTGATACTGGGATGTCACTGGATATTATTCCAGTGGTTGATGATAGAAGACACGTTACACTGAATGTTTCTGTTTATGGTGATATTACACTAATTGAAGAACGACTTCAAATCCCATCAGAAAAAACAACTATTATAGACATGGATCACTCCAAGTCAATGCCTGAAGATATAATAAGTGTGCAGACAATGCCAAATCTTGTCATACGGTCAACACAAGTCAGTGATGATAACATGAAAGCTGAAGAGGACAAGTATGATTCAATACTTAATTTTTCTACAGTTGAAGAGAATTCATTTGGATCTGGTGATAATCTTTCTTTGACTACTTCCATTCAGCCAAGTAGTGAATCAGTAACAGCTGGACATGGACCAAAATTAGTAGACAAGGATTTAGGTTCAGGGTATGCCATGCAGTTTGCAACAGAAACTCTCACAACTACTGTACTCAATGAATTGGGAATTTTCCTTCCAACAGTACCCTCACTGGTAAGCCCACATATGCCTCATGAGTCTAAAGAATCTGAGTTCGAGGCTAAACACATTGGAAGGACAAGCACAACAGATGATGTGTATGAGCCTTATACTTCAGCAAACAACCAAGTAATAACAGATCAAAGCAAAACAATGTCTATTTCTGGATTTTCTGGAATGGGCCAAGAAGAATCAGGTGATAAAAAGCCTATGATTCCTTCCCTTACACCAGATTTAACTATGGAGACAGAAAAGGCTTTGACAACTGACACATTTGATGTAAGTATGGTCACCACGCAGAGTATGTCCCAACATGCAACTGTATCATCTAGCAGTAGTGAAGAAAAGCATTCTACAGTATACATGCAAACAAAATCAGCATCAACAGAGTATGAAGAAACAGACTCAGTGAGTTTAAATTCTGTATCTCAAAATCCTAAATCCTCAGTAACTGTTTGGTTAGTTAATGGAGTATCTAAATATCCTGAGGTAATTATTCCAAGTACATCATCTGCAAAGGATTCAGATCAGTCTGATCATTCCTCAGATGGAACTTTCAAAGAGGTTAGTTCTGATATGGCAGCAACTTATAAACCACCCACTACAGACCTAGATACAACAGTGTCTTCTCTGCTAGTGTTTTCTCCTGAGCCTGAATCAGAAAGCATATCTACTGAAAGTACTCCTCACTTTAATAAATTTGTAACGGAGAGGTCAGAGGAGACAGAATCTTCTGTAAATGATCTGATTATTGAGGAAAATGCTACTGTTTCTGGAGATTCTCCATCAATACATGACTACCCTACTGCTTTTTGGAATTTTGGAGAAAGAACAAGCACAGATGTTCCAAAACTTAGCACAATAGAAGTTGAATTTTCTTCAGAGAGAGTGAAAAATCCCAGTCAAGAAAGTGATAGGAGTACTGAGAGAGAGAGACCAAGGCTTTCATCCGCACCTGTTTCAGATTCACCCAACAGTATAGAAGTTGGAGTATTTAAACCTGACCAGGAAGCAGTTACAATGCTAACTTCATCTTTGGAGCCTTTGGATAGAAGTTTGGAAACACAGTCAGCTTTGCTTGGTCAACAGGAGATCACAACAATTTCTTCTAACATTGCAACAAACAATACAGCCCCTGGAAACAATCCTTATTCAAATGAACAGTCAACAATAAGCTCTGAGTTGCTAAATACTATTGAACTTGTAACTTCATCATTTTCCCTTCCGGAAGTCACTAATGGATCAGATTTCCTGATTGGCACAAGTGTGGGTTCGGTTGAAGGCACAGCAGTGCAAATTCCAG
Seq A exon
GTAACTTCCACATATGATCACTGTTATATATTTTTGTTGTGATATTTGTAAATGATGTCTTAACTCTGATAAGAGGTATGGCAATCAAAAGCTCTGTATGAAATGCAACAGAACTTGTGAGCCTCAAGCTTTGAAATCAGCATGATTGTAAACCCCACTGCGACAAAATGGAGGAGAATGGGAGACCGAAACTCAAGCTCAGTGACATATCCTGAGTGTTTGCATCGTGGAGCTCTGGATCAGACTTTGAGGTCCCAGCAAGTTCTAAAAGTCAGGATGATAACGCTGATTGTGGTAGAGAATTCAGCTCTGATTATTCAGTTTTCCAATTTTCTATGAAGATACATATAGTTATTTTATCTGGTAGCTGTTCTGTGTTGGCATGATGATAGCACTTATACAGCTGGTTTACAAGTAGATTTTTTAATAACACATAGCAGAGCAGATCTAGCGTGCATCTTAAACACTGGAATTTTCTATTAAAAATATATTTTCTTAATCTATAAGGTAATTTTCCAAGAAAAAACTGAGACTTCATGAATTCAGTTTATCCGTAGCTTACCTGGTTAATACAGTGTCTATCTTTCATAAATTATAAATCTTCTTGTTAGACATAATTTGCTACAATAATTTGGTTTACATTAATGGTTATTAGGCACCATTTAATCAAATGCACAGATGGTGTAGGTAGAATCTTTATGATGAATGTAACTTCAATTTATTTTGTCTAGATATACCTGAAGAAGGAACAAAGCAAGTTTAAAATTACATGGTTTTCTATTATGTATCTTCAGGTAATCCAGGTAGCTATGGATTTGAACATGTTTACTAGAAAAATATCTGTAGAACACATGCACTGTAAAAATAGGTGCTTAACATAGGTCTGCTTTTTGGATTTAGACATAAGCAGTTTGAAAATAACTATTTTAAGATTATTAGATTCTTTTGAAAACCTCTAAAGCCAGAGTCTGCCCACTTACTTGCATGCCCAAACTTATGAAGCAGGATTTTCTCCTGGAAGCTTGAAGCAGAACTTAGTTACCTCCAGTGAGTAGATAGGGAATTTGGTACCTTAAAAAGACTGCTTCTGTAAAAGTTTTACTTGAAAGGGTAAAAAAGATGTTATCCTTTATTTTGTAAAGAATATCCAGAGCACTTTGGGAAAATGTAACCAAAATATAAAGTTTTTTCATGTCTTTGAATCAACTTAAGTTACAAAACTCTTACCCATTTTGTAAGGTAGGTATTTATTCTTGTATCCCAGAAGGGTTGTCTTCATTATTTTCCTCTAACTCTGAGAAGTGGATATACAGAAATGGTTGTCTAGTGGATTTTTGTGTGAATGATTGCTTCTAGGCATTAAATCAATTGCAAATACCTAGGTATTTAAACTCAATTGCAATACACATCACTAGAAGTCATCTCTGCAAGAAAAAGCTATTTAAATGATAACTCCTGTAAAACCTGAGGATTTCACAGCAGGTAAGCTTTTATCTTAATGTTTAGTTCAGCTACAAATGTACTCCATACCTTTATTTATATTCTTGAAGTGTGGTTTAAAGAAAGGTTACAAACGTGTATGAATGAAGACATAGTTTCAAAGAAATAAGAATCTGTGGGCACTGATTGTTTGAATATAATGAAGTGAAACATCAACACCCACCCAGTATATTCAAGAGATATATGTTCTGTGTACCCAGTCATTCTACATAAACTAACCATGTTCAAAAAAAGCAAAAGCATTTTCCATTCATTTTGCTTATGTTTAACTATTTTCAGCTATAATTAATTGTCGTGTCATGCTGACTAAATATTCTGTAGAATATTGTGACTGCCAAATGTAGTACAGATTCTGAAAATTATTTATGCTGGTTCATAGTAAATGCCATGTAATTTTTAAAGTTGTAAGTAGTGATGCCTGAAAATAAGCTTTACTATTTTACGAAAATATCTTAGTATTCTATCTTGTTGTTATAATGTCTGTAACAAGAGTAGGTCTTGCAATATAAATGCAAAAATGAAGAAAGATTTATTTTTCCAAAAATTAAAAAAGATATCAGCTCTTTGAGACCACAGGGTAAACTTTATTTTTCTACTTAACAG
Seq C2 exon
GACAGGATCCATGCAAAAGTAATCCCTGCCTTAATGGTGGTACCTGCTATCCACGTGGTTCATTTTACATCTGTACATGTTTGCCAGGTTTCAATGGTGAGCAGTGTGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015624:ENSGALT00000025190:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]