GgaINT1029885 @ galGal4
Intron Retention
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:406531-406885:+
Coord C1 exon
chr5:406531-406613
Coord A exon
chr5:406614-406797
Coord C2 exon
chr5:406798-406885
Length
184 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCCACGTTCCTCCCTGCAGGCC
3' ss Score
11.64
Exon sequences
Seq C1 exon
GCTGCCTGAGCAATGGGGTGGCCCACGCCGAGGGAGAGGTCTTCACGCCGTCAGATGGAAACTGCACCATCTGCGTGTGCCTG
Seq A exon
GTGAGTGCCGCGCAGTGGGACGGGGCTGGGGGGGCAGCCCCCCCCCCTGGACGCCCCATCCTGTCCCGGCTGCTCACGACGCTGATGGGACGCACCGGGCTGTGGGATCCAAAGCGTGCGCTGCCACGTGCCGGGGCTGACGTCCATTGCTCATCCCGTGGCCGCCCCACGTTCCTCCCTGCAG
Seq C2 exon
GCCGGCAATATCTCCTGCATCTCCCCCGAGTGCCCCCCAGGCTCCTGCCCCAGCGCCTCACCCCCCAACTGCTGCTCCTGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882:ENSGALT00000045690:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(47.3=92.9)
A:
NA
C2:
PF0009313=VWC=PD(49.1=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCAATGGGGTGGCC
R:
CTGGCAGGAGCAGCAGTTG
Band lengths:
162-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]