GgaINT1029886 @ galGal4
Intron Retention
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:406798-407084:+
Coord C1 exon
chr5:406798-406885
Coord A exon
chr5:406886-406998
Coord C2 exon
chr5:406999-407084
Length
113 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GCTGCCTCCCTCCTGCCCAGCAA
3' ss Score
5.26
Exon sequences
Seq C1 exon
GCCGGCAATATCTCCTGCATCTCCCCCGAGTGCCCCCCAGGCTCCTGCCCCAGCGCCTCACCCCCCAACTGCTGCTCCTGCCAGCCAG
Seq A exon
GTGGGGTCCTACCAGAGGAGATCGAGTGGCTGCGGGTGGCTGTGACGCACGCATGGGGCCCTGGGGGGGGCTCAGCTCCCCGTCTCAGCCCTCGCTGCCTCCCTCCTGCCCAG
Seq C2 exon
CAAAATGCAGCTTCCGTGGTCGGACCTACGCGCACGGAGCCCGCTTCAGCTTGGATGGGGACGAGTGCACCACCTGCGTCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882:ENSGALT00000045690:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.1=90.0)
A:
NA
C2:
PF0009313=VWC=PU(44.1=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCAATATCTCCTGCATC
R:
AGGTGGTGCACTCGTCCC
Band lengths:
163-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]