GgaINT1030605 @ galGal4
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
AADN03017309.1:2479-3016:-
Coord C1 exon
AADN03017309.1:2877-3016
Coord A exon
AADN03017309.1:2583-2876
Coord C2 exon
AADN03017309.1:2479-2582
Length
294 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGCT
5' ss Score
-2.77
3' ss Seq
TGATTTCCATTGCCTTGCAGTGA
3' ss Score
7.96
Exon sequences
Seq C1 exon
CCACATTAACATTGGGAGCCGCTTTCAGGCTGAGATCCCGACCCTCCAGGACAGACCAGGCTTAGGAAGCGCAGAGCAGGCGGCCTTAGTGTGGAAGCCATGGGGAGACATCGCAACCAACGAGGAGACGCAGGACAGAG
Seq A exon
GTTGCTTCACCCTTTACCTCCAGGAATTCGGAGGTCCTCTGGTTAAAAATGCTTTCGCTGCAGCTTTCTGCACGCCCCGAGGCTCTGCCTTGCTCTTCCGTGCTCTGTTCCATGGGGCAGAAGTGGGGCTGGGGGCCGGAGCTGTGGGATGTGAGTGGCTGTGCGCCCCCAGGTGGGCTGCAGGAGGGGGTCAGCTTGGTGGGAGCCCACAGCAGTGCCCCTCACCTCTCTTTTTTGGTACCCCTTGGGTTCTACGGTGGGAGCCGATGCGCTTTGATTTCCATTGCCTTGCAG
Seq C2 exon
TGATGGAGCTGCTGAACATGGCGTGTTCCAGCGTCATGCCGGGCGGGGGAACCAACCTGGAGCTGGCGCTGCACTGCCTGCACGAAGCACGGGGCAACGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(78.9=93.8)
A:
NA
C2:
PF0144819=ELM2=PD(19.3=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTAACATTGGGAGCCGCT
R:
GTTGCCCCGTGCTTCGTG
Band lengths:
236-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]