GgaINT1030612 @ galGal4
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
AADN03017309.1:5544-7008:-
Coord C1 exon
AADN03017309.1:6858-7008
Coord A exon
AADN03017309.1:6415-6857
Coord C2 exon
AADN03017309.1:5544-6414
Length
443 bp
Sequences
Splice sites
5' ss Seq
CCCGTACGT
5' ss Score
7.7
3' ss Seq
GCTTTTCCTCTGTCCCACAGGAG
3' ss Score
10.75
Exon sequences
Seq C1 exon
GGCTGTGCCTTCCTGGGGTGCCCAACACGGACACTGCAGCCGCACAGAGCCAGCCGTCCCCTCCCAGCTCTCCGCTGCCCTGCGGCTGTTGTGGGACGCTGTTGTGCAGCACCAACCACAGCCCAACTGACAGCCAGCAGCACCAACACCC
Seq A exon
GTACGTGGGGCGCGGCGGGCAGCTGGGGTGTGTGTGTGACACGGATTGGCTGCTGGGGGTGTTGTTTTCCCTCCTGGCAGCCGGGAGGAGCGGTGGTAGCAATGCCAGGCCAGGAAGTGTGGCTGTGTTGGGTTACGGCACCGCTTCCTCGGCTGCAATCTGTGCGTGGAAGTGCAGTTCTGAGGGCTGAGCCGGAGCAAATGTGGGGAGGATTTGGGTCCCTTTTGTGTTGTGTTGGGGTGGAGTTGGGTTGTGCTGCTTCCACAGCAGCGCAGGACGGTGATGCGTCCCACATGAAGCCCAAATCTGCGGGATTTGTGCCCTGTGCCACATCTGCCCCCCAAACAACACCGTGCCACGAACAGCTGGAGCTCAGGGGCCGAGCTTTGGGTGCAGAGTGCTTTCATTTCCCGTTTGCATGTCGCTTTTCCTCTGTCCCACAG
Seq C2 exon
GAGCAGGACAAGGAAAGGCTCGGTGTGCCCGGAGCGACGCTGTGAGCGCTGTGAGCTGCAGCCCCCGCGGTGCCCGCAGAGCGTGGGCTGTCCGCCCTGCAGCCTCGTGGAGGACAGCAGCGTGCCGGAGGGCTGCCCGCAGATCCCTGCTGCTGCTGCTGCTGGAGATGAGCTGAGGGGCAGCGTGGCTCCCAGCCCCGCTCTCCTGGAGCCCCCAGGGATGGGTGCTGACCCCGGCGCCGCCGTGCCGCGTTTCGCGGTGCTCAGCTCCCACCCGTGGGTCAGCACCGCGCCGCTCTGCGCCCAAAGGAGCAGCTCTTGTTTCACACTCAAACCCAGCCCTGCTGGGAGGGAAGCTCCCCTCTCCTGCTCCTTCCTCCCTGAGTACACGGACGCTTCGCCTTTCCCTCTCATGAGCTCCGGTGTGGAGGAGGTGGCGTTGGGCCGCCCCGAGGATGGCGCACAGCCGTGGCAGAGCATGGCGGAGCAGCAGGCAGTGCTGAGTGGTGGCGGGCAGCTGAGAGCCGCCTGCCCGGAGCCGGGGACGCAGAACCTCCTGCAGGTGTTGGCCGCCTCCCAGCACGCCCTGTCCCACGTGCTGACTCCCAAAGGGCCGAAGGATTCCTCTCCCTGTGCTCGAGAGCACGAGGGCAGCGCAGCGATGGACCGGCTGCAAAACAAGGCCGCCTCCAGCAAGGGGGAGAGGAGCAGAGGCTGCGGTGTGGCTGCAGGCAGGTCGTGGCGTGTGCCCGCTGCGCGCAGGGAGAAGCTGTCGGCAGGGCTGGCGGGCACAGCATCCCCCAGCCAGGTGGCCATGGCCTCCTTTGCACCACGGCAGCAGAGCGGGCTGACCGTCCTCCAGCGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTGACAGCCAGCAG
R:
AACAAGAGCTGCTCCTTTGGG
Band lengths:
353-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]