GgaINT1030639 @ galGal4
Intron Retention
Gene
ENSGALG00000000160 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
JH376303.1:20366-20724:+
Coord C1 exon
JH376303.1:20366-20545
Coord A exon
JH376303.1:20546-20652
Coord C2 exon
JH376303.1:20653-20724
Length
107 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATC
5' ss Score
4.2
3' ss Seq
ATTTTGCTGTGCTTCTGTAGAGA
3' ss Score
7.47
Exon sequences
Seq C1 exon
CCCACTCGGAAGAAAATGACTCCAGAGACCTTCAGAGCTCACCAGAAAGTGGGATGGGAGCTGAGGAGGGCGGGCTGCCCGAGCCCGGGAGCCCTGTGGGAGGGGACGGCGGTGTCACAGAGCCCACGAAGGCAGGAGAGGCTCAGCCCAAAGCAGCGGGCAATGCTGTGCCATTCCTGG
Seq A exon
GTAATCCTGCTGCTACAACACTGAGTTTTACAGCCTTTGCTTCTTGTCCCCGAAGCGAAGGTTAACGCTGTGATATGTTGGGCTTCTATTTTGCTGTGCTTCTGTAG
Seq C2 exon
AGAATCCTGCCCAGCTGCTCCAGGCGGTGCCGATGGGCGTGGATGGGCAGAAGGAAGCCGTAACTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000160:ENSGALT00000000216:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTCGGAAGAAAATGACTCC
R:
CAGTTACGGCTTCCTTCTGCC
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]