GgaINT1030641 @ galGal4
Intron Retention
Gene
ENSGALG00000000160 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
JH376303.1:8668-13035:+
Coord C1 exon
JH376303.1:8668-9342
Coord A exon
JH376303.1:9343-12973
Coord C2 exon
JH376303.1:12974-13035
Length
3631 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCTGTGTTCTCTCCCCCAGGAC
3' ss Score
13.32
Exon sequences
Seq C1 exon
GAAGCACGGCCCTACAACCCCGAAGCGCCGAGCGCAGAGAAGAGGGAGGAGTTCCAACGAGAGCAGAGCGTGCCCATGGGCGTCCCGCCGGCCGGCGTGGCGTGCGGCCCGGCCTTCCCACCTCAGGACGTCATGAAGCCCCCGCCGGCTTTCCAGAGCGACCCGGCCAACCCTCCCCCATTTTTCCCAGCAGAGCCAGCGGGGAAGGCGGGCGGGCTGTGCGCGGCGCCCGTGGGGAAGGCCGGCCCCCCGCCCGCGGTGCTGCCCGTCATGCCGCCCATCCTGCCGCTGGCTGTGCCGCCCATGGTGCAGCCCGTCGTGCCGCCGCTCATCTCGCAGCCCGTGGTGCCCATCCTCCCCCAGCCGCCCTTCTCGGCAGAGCTGCTGGCCATCCTGGAGCAGCGGGACAGGATCCAGCACGAGGCCGGGAGCAGCCAGCCCAGCGCCCCCAGCTCCGGGATGGGGCAGAAGCCCTTCCAGCCGCAGCCCGAAGGGCCCGTTAAGTCCCCCTTTGGCGTTGTGAAGGCGTCGTGGCTCCCGTCGTTCCTGCAGTCGGACTCCCAGAAGATCAAACGGTTGCCCACCCCGTCAATGATGAACGACTACTATGCCACGTCGCCGAGAATATTCCCACATATGTGTTCTCTGTGTAACGTAGAATGCGCTCGTATGAAG
Seq A exon
GTGAGTGTCTTTAAAGATTATTGCCATAGTTGTACCCAGCTCCTAACCCGCTGCTCTGTGTGGTGAGCCGATGTCTTACTGTGCCTCCGGTGAGCTGTGCTGCTGCTCGCCGGCGCGGGTGCTTTTGTGCAGGTGTCAGACTGCCGCAGGCGCTGTCGGTGCGGGATCGGCACCGTGCTGCACAGCGTGCTCTGTCCGAACCCCGCGCGCGTTGGTTGGGTTGTTGTAACGTTACGAACGGTGCGTGACTTTGGATTGCAAGCGGCAGAACAACCCCTTCGTCGCCAGCTTTAACCGCCGATGTCGCCCGGTGGTCAGCAGTGCTGTGCTGGCCCCAGCAGGCGTTGTGCTCTCAGCCCTGCTGCCGCAGAGCCGATTCCAACGGAGCACTGCTCATCTGTAGGAACGTCGCCTTCCAGGCGTGCCCTGCGTGGCGTTGGCTGTCCCAGGGGTGGCTCCCAGCTCTGAGCAACGCACACAGCACTGCCATCCATCCATCCATCCATCCATCCTACCCAGCCGGGGCTGCGGAGCTATGAGCGGCGTCGGCCGTTGGTGGAAGAGGAAGGAAGAAGAGAGAGAAGAGAATCCTGAAAGCCGTAGATGTTCCTTGAAGGAGCTGAGCTCCATGTGTCAAAACCCACAAGAACGTGACTTGCAATAACAGCGTGGTTTGTTACTGGTTCCGTGCATTGAAGTTTGAAGTAGCTTTCAACGCACGCGGGAAGTCGGGGGGGAGCAGAGCCATGCAAGGTTGCTGCATCTCAGACGGTGAGCGGCTGCTGCAGTGCTGGCAGCTGCGCCAGGGACGTCGCAGTGCTGAAGCTCTCCTGGTCAGGAAGAAATGCAGCAGGACGGCGGGTTGGGAAACTGGAGGGGGGGCTCCATTTCGGAGAAGAACGTCTAAAATGGAACAGGTAACAGATGAGGGCTTGTGTTGAGCACTGGGAGCTGCGCCCTGTTCCCGTGTGAGCCATTCTGTACGGAGCTCTGCGGAATGCGGCCGCTGCCAAAGGAGCTGGCTTTGCCTCGGAGACGTGGGGCTGTGCCTTCGTGTCCCACTGTGGGTTCCCACGTTGACATCACCGCCTTTCCTCCCTCCTTGTGCTGCCCTGAGCTGAGCTCTGTGGTTGAGCTGTGATGTGTGGCTTCGGGATGCTGTGCTACGAACTGCTGCCTTTGTGATGGGGCAAACTGGGAAGGTGTGGAATCACCAGGGTTGGAAGAGTCCTCCAAGAGCAGCCGGTCCAACCTCCCACCTGCCTCCGGTATTCCCCCACCGACTGAGTCCTGCGCTGCAACGTCTGGACAGCTGTGGTGTGCTTGGGAAGAAGAGGTGGCTCAAAGCACCGCGGGTGCTGAGTTACGGAGAGGATGGAGGATACCGAATGAGAAGAACCTTATCCAGCGCTCAAAGAGACTGCGTATCTGAACAGCAGAGTTACAGCGTTGCTATGATGACAGATGTGGGGTTCAGAGCGCTCGTGGTGCTGAGCATTTATTGTGCTGTAACTCTTAGGCAGTGCAGTCCCACACAGCGGCGGTGCCCATGGAGCACAGCCCATGTCAGAGCAGTGACCCCAGCGCTCCATCTCTGCATCGCTGGGCTGTGTCCCTTTGGCCCCCCCTATCCCATGGAGCCCAGCCTGACGAACCCTGCAGCATCTGCCCAGCTCTCCCTGCGTGCCATTTTTCTTGGGTATTTAACGTTTCTTGTTAACGAGCTTGGGTGCAGCCAAAGCTGAAACAGCTCCGAGAGATGTCAGCGTACCAAAACAGAGAGCTCTGTCTGGAGTGCCACACACCTGAACGTGTCTGTGTGCTTCTGGCACCGGAGCAGACCTTGCGTGCCTCTCCGTGGAGCTGCCTGCACCTGAGGGCAGCGCTCCGTGTGAGCTCTGCTCTGGGAAGACGCCCATGAGAAGCACTGCAGTGCTGCTGCGAGGCACACCCGCTGTCCTCGTGTACACAGTGGGTCAGCAGAGGCACGTTTTTGTGTCCTGTGGTGTTCCTGCGATGAAGAATCATCCTGCCCTTCGTTAGGTGGGGTCTCACCTTGGTGTTCTCTGCAGGACCCCTGACAGCCTCCCCAGCAGGGCGAAGCACGTTGTGAAGGCTTCTCTTTCACCCCAGTAGTGACTGTAGTGGAGTACTGAAGCGTGATTTCTGCCTTCAGCCACCTCATTTCCAAACCACGTGGATGGTAACACCCAGCAGCAGCTCTGCAGCCCCCAGCCCAGCCCCACGCCTCGCGGTGCTCTTTGCTTTAACAGATGGATGCTGAGGCTCCAGGGCTGGCTGATCCACAGAGGTCCCCGCAGCCCTCACCGTCCTGCAGCGCTGGGACTGCCCCCGTGGTCGCTGCTGGGGAGGGCCAGAAGTCGGCTGGAGAGGAGGAATGCACCCAGATGGAGGCTCCTGTAACGGTGTGAGGTGTGAGGGTGCATTGCTGCCGTGAAGGCTGGGAGAGAAGGACGTTGGCTCGTTGGGGAGGAGCTTGAGAAGGGGATTGCTCTCCAGCAGCACACTGCTGGCATGCACAGAGCTCATAGCGCTGCACTGCTGCTCCTGGTGCTGCGTGTGTGCTGTGCGTGCAGCGCTGCCTGTGAGCTTACAGGCTGCTCCATCAGCCTGCTCCCCAGCCCGTCCCTCACCGTGCCATATGGACTCGCTGAGTTTCCGCTTCAGGAGCTGGAAATAGCTTCAAACAAAACCCTTTTTCTTTACAAGCACCCAACCAATGGTGTGCTGGGCACGAGGTGTTCTCCCACTGGCACGCTTTGAGGAAGCCATCATCAGCTGTGGTTCGAAGCACCGTGTCGGCCTTTCAGCCCATGAACGACTTAGTGCCAGCTGAGTGCTTCGTGGGGTCTTAGAATGGTTTTATTGTCCTCTGTTAGCAGCCAGCGTGCAACCGGACGGGCTGCATGCGATGTCAGGGCAGCCCTGTTTTGTTACGTGGCCGCCCCACTCCCTGAAGCACCGCAGTGGGTGCTGCCCTGCAGGGCTCAGTGCTCGTCCCACTGCCGACCCTTCGGCAGCAGGTTTAGTTACTGTGATCAGCTCAGTGCTATTGAGAACGGTCTTTGTGCGGAGCTGCCCGTGCTGTTGTGCTTTCCTTGCACCACGTGGAGGAGTTCCCAGCTCTGAGGGCTGGCGTTGTGGGTCTGGGTTCGTGTTGTGCTTCCCCCTCAAGCGGGGCTTTGGTCGCAGCTCTCCCGCAGAGCAATTGATGGGGGTGGTGAGGTCTGTGGGACTTGTTCATGACCTCTGGGTGCAAGGTGTGGCTGGCAGCGATGGTGCTGGGCAGGGTAAGCCGTGCTGCTGCTGGAGCACTCGGGGCCCTCCTGGTGGTGCATCGTGTTGGGAGCTCAGCGCAGCACAGCGCGTGGGCTCGTGCAGCCCAGCAGCCACGGAGGCGCTTATGCTCTGTGTTGTGCAGCAGCCTTCCCCAGTCACTGCGTGCTCTCATCTCTTGCACCAAGAACGGTGATGCCAGGTGAGCGATGCGGCCTCGCTGACTTGCTGGTAGGACTGGCTGGTGGCACTGGGAGGGGAAGCACGACGGCACTTCAGCTTGTGGCCCAGCTGTGTGCTCACCCACCCCCTGTGCCTGTGTTCTCTCCCCCAG
Seq C2 exon
GACTGGATCCTGCACCAGAACACCCCCTCCCACATCGAGAGCTGCCGCCACTTACGACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000160:ENSGALT00000000216:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]