GgaINT1030719 @ galGal4
Intron Retention
Gene
ENSGALG00000012958 | ZSCAN2
Description
zinc finger and SCAN domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20994]
Coordinates
chr1:60057551-60057802:+
Coord C1 exon
chr1:60057551-60057599
Coord A exon
chr1:60057600-60057758
Coord C2 exon
chr1:60057759-60057802
Length
159 bp
Sequences
Splice sites
5' ss Seq
AAGAAAAGT
5' ss Score
-5.37
3' ss Seq
TCCTCTGTTCACTCCAGCAGGTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
AGTGTGTCTGGTTTTCTTTTTAAGGAAAAGGTTTATGATTGCAAGGAAG
Seq A exon
AAAAGTACTCTGCTTAGCAGGGGACACTGTTTCTGTGGTGCTGTCTGCTTCCTTCCTTGATTGAGCATGGGAATGCTGGAGAACAGCAGTAATTCACAGAGAACAGGAAGAGAAATGGAGGGGCTTATTCATCGCTAGTTCCTCTGTTCACTCCAGCAG
Seq C2 exon
GTGGCCAGACCATGGGTGACATACAGAAGGCTCAACCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012958:ENSGALT00000021139:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTCTGGTTTTCTTTTTAAGGA
R:
TGAGCCTTCTGTATGTCACCCA
Band lengths:
83-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]