GgaINT1031008 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:25631928-25636020:-
Coord C1 exon
chr7:25635958-25636020
Coord A exon
chr7:25632032-25635957
Coord C2 exon
chr7:25631928-25632031
Length
3926 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
CAATGTTGTCTTTTGTGCAGACC
3' ss Score
6.87
Exon sequences
Seq C1 exon
CTTCTCGACGTCATTCCAGGTCCACTAGTGCTCTCTCCACTGCTGATTCTGTTGGGCAGTCAG
Seq A exon
GTGAACAAGCGCTAACTGCATGAATCTGCTTCTTATATGTAGTCTTGTTTCACGCCATTTTAACATTTGCTGTCACGTGCATCAGCCAGCACTTGGCATGTGCTTCTCACTGCTGTGAGGCTTTTTGTTCTGTTTTGTTCAATGTGGCTTTTTCTTTTTAATTTCGTTTCTTGAATGTTTGTTTTATTTTATTTTATGTACTTCAGGAACGTTGTGAGCAATGTTTAAACAAAGGGTGATCCAGGGCTTTCTCAATTCTCTTGTAAATTGGATCAGTTGTACGGCATGGGCTAAATCCTGAACAATTCAGAGTCCTTGCAATTCATGTCTGTTTCTTCTTCAGCAGTGTAGCAGTTCCCAATGTCTAGGACAGGATCTCAGTGGGTCTCATTCCATTTATTACTAAGCTTTTCAGACTCCTGTCTCTGTTAATGGAAGTGCTTTGCGGGATCCTGTCTGATATTCACAAAAGCAGCAAGAATTAAGCAACTGATGAGGTTTCAAAATGAACTTTGGAGCATAACACGTGCTGATCCATCCTTCGTATACTACTGAAGACCTTGTGCAAAGCTCATGGAAGTTGTTGGGAAAAATAATTCCTTTAATTTCAGTGGGCTTTGCATCAGTAGAAAATAGCAAGAAAAACCTTCAGATTCCAGTCGCCTTCTTCACTCCTGTGCTGGATTTGCAGTTATGGAGTACCTGCAACTCCCTTTGAAAACAGGATATTTCACTAGGAGTCTTAAGCAAAAACGAATGAGGGCTGGTAGTGTTAGGTCAGCAGAAACTCAATTGTAGATACAAAGATGATGTAGAAGATGAATTCGAGCTTCAGGGCTTGATTGGAGGCTAAAGCTGCATAAGGAATTGGTGTCACTAAAAGTTATTTAACTAAGTTCCTTCAGGTAGGCAGTGAAAAATGTTATGTTCCTCTTAAGTGTAGTTAAATTGCTGTCACTTAAATTGAACTCTAAAAACATTTTCCCCATCAAGCTACTGCAGAAATGATGCAAGCAGATTTGACTCTGGCATGTTTCAAAGCAGCAATTCAAATTTGTATTGAACAAAACAATTGTCAAGATCAAAAAGGGCCCTCAGGTCTAATTCAGATCTAAGCTTAAGCTTTTTTCTTCAACTTCGCATGATAGTCAATTCATGCTTAGCTCCAGTGGTTTGGTACAAAGCATAATGAGATTATATATGCTTATCTGTATCCTAAAGAAGGCCAAAGAAGTGGCAAAATCAAGGAATTTTACTGGAATTTGCTGAAATTCTACACCAAGAAACAATGATAATTAAAATAGGCAGAAGGAAAAGTGAGTGTGACCAGAGCACCTACTGTTCAGCTTATTTATTGACAGTGACATTGGGCTCCTCTCTGAGGGTTGTTCTTGGAGCCAAACACATTCCCAGCCCTATGCTAGAGATATGCCGAGGTCCCTTCTAAGGTCAGGTGTGTGCGTTGAGGTGTGGCAGCAGTGTGGGAAAAGCCCACATTGATATGGCTGTGATGGATTTAATGGTCACTTCAAGAAGTGTTTTAAAGATTCCCTGATAACTGTTGGAGACAGATAAAAGACAGCATGCCAACTTACTGTACTTACTCAATTTGATTAAAAAGCCCTGTTTTGTTTTGTTGTTTTTCCTTTTCATGCTGGGTATTTAAACTGACCTCCAGTTGAATTACGTTGTCATTTTGTTCTTCATTTTTTTTAAAAATAAAACCAGAAACTATCTTCCCTTTTCTAATGTAATAGTAAATTAACATGAAAATGTGCAACAATGATATTCTATGATATTATGCCATTTCAAAGCTATACAGCCAAATTCTGATCTCAGTAAGACTTGAGTAACTTCATCAAGTTAGTTGGTTTACATATAACCAAGTCCAGAACTTGTCTCAACCTTTACAGCCCTTGTGTTGTACCAGGTCTCATTTACACTTAGAAAAACACTTGTCTTTTCTACATCTTTTAGTACGTATCTCTGAAACAGCGACTTCAAATTCAGTCTGACTCAATGCTTTATCATCTTCTGTGCTTCCATTAAGAGCAAACAGATCTTTCCATTTGAGGGATGAAGTGCGATTTCAGCTACGTATTTGAAACGATTCTTTTAACCCAAGTGCATTAAAAAAGGGGATAGTAATAACACATACAACTTTTATTTCTTTGTGAAATATCATTCGGTTACTTTTTGGCAGTAGTTCTAAGACGTTTGTTTTTGTTGGTTTTTTTTTTCCTCTCGTAATGTGTTTTGTAGAAATTGTGCTTTTGTTGTAAATCAGAAATGTCTCGTCTGGTTGCATAACTGGGAAAGAGCAAGTTGTGGTAACACTTAGGAAATAAATGCTAATCCTCATCTTTTTTTTCTCCAAAATATTTTAGCTTTTAAAAAGTTGCCTTTATTCTCCCCTCAGTAGCTTTAATCCTTGCTCTGACATGCTCAGGTAAAGCTTTGAAATTAGGATGACAGACTGGCAGGCTTCAGACTCTCATTTCAGTTATGCAGGGCAGCGTGAGCATATTCCTTAAAAGGGGTTTCAGTGCAGTAGGCTTCTAAAGAGAAAAGCAACAAAACTTTGTGATAAGCAAAGTTTTTAAAAATAAGCACAGTAAACTGCTGAACGTAACATTCAGTTTTGTGGAAACACTTGATGGAAACACATCTCAATAAGCAGCCTTCTTCCTTCATTAAATTAAATATAGATGAACTACTGAAAGACCTGTGGCTGCATCCAGCGTGGGTCAGCTGATCATCTGTTAAATGGGTTTGTGCAGCTTCATTTGTGCACCTCTGAAATGCTGGCAGAGCTCCTATTGGCACGTGTGGTGTGAGATATGTCCCAGAGGGATCTTTCGTGGCCCTTCTGGAGCAAGGATAGCCCCAGATGGAAACAAAAACTTGAAATGTTCAAAACAGGCTCCTTCTGGTTACAGACTGGAGCCAGGATTGCAGAAATGGATCTCTGATCTGCAGGAGCTGTGCTGCTGGAGCCTGGCACGTGGCCCTGGTTGCTGATTCTGCTGTATCACTGCTAGTGCCGGCTTTCCAAATACGGCTTTTGCTCAAAGAAATTCATTTCACAATGTTTTTATCAGACTCCGGGCGAATGATAAAGCAAGCTAGTGATTATTGGGGACGTAAGTGGCATTTGGCACTCAATCCTGTTATTTTGGACGCTGTTCAGAGCTTTGCCATCAAATTCATAGGGAGACAGATGATATTTTATGATCCCCCCCCAAAAAAGATTTGTTTTATCATAAAACTTGTAAATTGCATTTCAGTTGGGTGTACATTTAAGCTGCTTCTCAAGAACAACAATAAAACAAAACTGGAGTAACTTCACAAACAAATAATAAACCTTATTTTTGTTCTTTGAGGAGTAGGGAGATATTCTGGTTAATCAAGCCTTGCAACCTAAGAGAGCTAATGTGCTGCTGATGATCTCATGTACTTCCCTGAGAACAAGCTACAAGATGAGTGCTCTGGTATTAACATGCTCTGACACCGGGCACGACTCTGTTTCTCAGAAGTTAATGAGAAGTCTTCAGTTGATTCCTGAGAGAGCCAGACTGGGACCTGCATGTCTGCCTCTGACATTAAAATAAAACCCCAAACGATTTCTATTAAAAAGAAACACAAATTAGATACCCTTCTTCCCATCTTAAAAGCAAAACCAAAGCCCAACAAGAACAAAAAACACATGCCCCGAGGATCTGAAATTGACTTGGGCACCCAACAAACAATAGTTTATTTCTTACTGTCATGGCAAACTCTCGTAGAGTTGTGGATAAAAGAGTCTTTAATAAAAAAGCACTGAGAGTTCCCAGATCCTTTGGGGAGAACTGTTCAGACACCTGATTAGGATTCCAAGTGAATGTGAATTTACTTAACAGTCCATTTCAATGTTGTCTTTTGTGCAG
Seq C2 exon
ACCGGTTTGGACTCGGACAGTCAGGCAGGATGCCTGCTTCTGTGAATGCCATGCGAGTCCTGAGCACAAGCACAGATCTGGAGGCCGCTGTGGCTGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645:ENSGALT00000019030:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]