GgaINT1031449 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr1:60057759-60059149:+
Coord C1 exon
chr1:60057759-60057802
Coord A exon
chr1:60057803-60058078
Coord C2 exon
chr1:60058079-60059149
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGAAAGG
5' ss Score
2.9
3' ss Seq
ATGGCACCATTTGGATTCAGCAG
3' ss Score
1.15
Exon sequences
Seq C1 exon
GTGGCCAGACCATGGGTGACATACAGAAGGCTCAACCTCATCAG
Seq A exon
GAAAGGCCTGCGAGAGCTGACTTGCACCCATTCACCTCCAGAAGGCCCACTACAGATACCCTCTGGGACCCTGATGAAAGACCAGACTGCAAGCAGGAGCTGGAGATGGAAAATGAGATGAAGCTGTCTTTTGGAAAGAGGCAGGGAAAGGGAGCTCCCCGTGTGATGGCAGTGTGGGAGTGCGAGGATGGTGGTGGCACTCCCATTGGCAAGGTGGTCCTTGCTGGGGACAGACCAGACCCTCCTGTATGTGGGAATGGCACCATTTGGATTCAG
Seq C2 exon
CAGGTGGGAGAGAAAACCTATGATTGTCCCGAATGTGGGAAGAACTTCAGCCGGAGCTCGTATCTCAGCCAGCACCAGAGGATCCACCTGGCAGAGAAACCCTTCAGCTGCTCTGAATGTGGGAAGAGTTTCACACGCAACTCGGACCTGATCAAACACCAGCGGATCCACACAGGTGAGAAGCCCTACCAGTGCAATGAGTGTGAGAAGACCTTCAGCCAGAGGTCCAATGTGATCAGGCACCAGCGGACCCACACGGGAGAGAGACACTACCAGTGCAATGAGTGCGGGAAGAGCTTCAGCCAGAACTCGCATCTCGTTGTCCATCAGAGAAGCCACAGAGGTGAGAAACCATTTCACTGCCCCCGCTGTGAGAAAAGCTTCAGCGACCGCTCCTCCCTGATCATACACCGGAGGGTCCACACCGGAGAGAAGCCCCACAAGTGCCAGGTATGTGGGAAACGCTTCCGGGACAGCTCAGCCATCATTCGGCATCAGAGGATCCACACAGGAGAGAAACCCTATGAATGCACCGAATGTGGGAAGACCTTCCGCCAGAGCTCCTCGCTGGTGACCCACATGCGGACGCATACGGGAGAGAAACCCTACAAGTGCCCCGTGTGCGGGAAGAGCTTCAGCCAGAGCTCGGCACTCACCACGCATCGCCGCATCCACAGGGGAAAGGTGTTGCCCCTGTACCACGGCAGCCTCTTGCCCAGCCCCTACCAGTGTGCTGAGTGCGGCAGGCGGTGCAGCGACCACCCCTCTCTCATCAAGCACCAGACCACGCACGTGGAGGAGCGGCCCTACATCTGCGTGGAGTGTGGGGACAGCTTCCGTCGGAGCTCAGCACTCAATGTCCACTTGAGGATCCACCGCGGGGAGAGGCCCTACAAATGTGAGGAATGTGAGAAAACCTTCCGGCACAGCTCAGCTTTGGGCGCACACTTGAGGATCCATGCGGGATCCAAGCCCTACGAGTGCGGTGAGTGTGGGAAAAGCTTCCGGAAAAGCTCGACGCTTCAAGTGCATTTGCAAATCCACGTGGCCAAGAAACCTTATAAATGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012958:ENSGALT00000021139:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGGTGACATACAGAAGGC
R:
TAGTGTCTCTCTCCCGTGTGG
Band lengths:
307-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]