HsaALTA0000025-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000107331 | ABCA2
Description
ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr9:137016574-137017124:-
Coord C1 exon
chr9:137016920-137017124
Coord A exon
chr9:137016678-137016697
Coord C2 exon
chr9:137016574-137016677
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCTGGTACTTCCCACTGCAGAAG
3' ss Score
7.12
Exon sequences
Seq C1 exon
TCCCTCATGTCCACGACGGCCTTTGGTCTGGGCTCTAAGTACTTCGCGCTGTATGAGGTGGCCGGCGTGGGCATCCAGTGGCACACCTTCAGCCAGTCCCCGGTGGAGGGGGACGACTTCAACTTGCTCCTGGCTGTCACCATGCTGATGGTGGACGCCGTGGTCTATGGCATCCTCACGTGGTACATTGAGGCTGTGCACCCAG
Seq A exon
AAGTCCTACTGGCTGGGCAG
Seq C2 exon
TGGGCGGACAGAAGCCTGGGAGTGGAGCTGGCCGTGGGCACGCACCCCCCGCCTCAGTGTCATGGAGGAGGACCAGGCCTGTGCCATGGAGAGCCGGCGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107331-40-45,40-44,40-43-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(26.3=88.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGGCATCCTCACGTGGT
R:
CTGGTCCTCCTCCATGACACT
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains