HsaALTA0000031-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000064687 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:37]
Coordinates
chr19:1040102-1041426:+
Coord C1 exon
chr19:1040102-1040195
Coord A exon
NA
Coord C2 exon
chr19:1041354-1041426
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTGTCCCGTCCCCTGCCCAGTCT
3' ss Score
7.06
Exon sequences
Seq C1 exon
GGGCAAGCTCAGCGCACTTGGCTTAAGGGGCGGCGCGCTCCCTGCCTGCTGCTGGGCGGAGGGAAGGCGGCAAGAGCTGCGGAGCCCCTGGAAG
Seq A exon
NA
Seq C2 exon
TCTCACCATGGCCTTCTGGACACAGCTGATGCTGCTGCTCTGGAAGAATTTCATGTATCGCCGGAGACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCAGCGCACTTGGCTTA
R:
GGCTGTCTCCGGCGATACAT
Band lengths:
162-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)