HsaALTA0000420-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:19989]
Coordinates
chr9:140069784-140070289:-
Coord C1 exon
chr9:140070160-140070289
Coord A exon
chr9:140069921-140069924
Coord C2 exon
chr9:140069784-140069920
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCGGTGACTCTGCACGCAGCCA
3' ss Score
5.23
Exon sequences
Seq C1 exon
GCCATGCGGACCCTCAGTTGGAAGCACACCCTGGGCCTGGTGACCATGGACGTGGAGCTGGCCGACCGCACGCTGTCTGTGGCGGTCACCCCAGTACAGGCGGTGATCTTGCTGTATTTTCAGGACCAAG
Seq A exon
CCAG
Seq C2 exon
CTGGACCCTGGAGGAACTGAGCAAGGCGGTGAAGATGCCCGTGGCGCTGCTGCGGCGGCGGATGTCCGTGTGGCTGCAGCAGGGTGTGCTGCGTGAGGAGCCCCCCGGCACCTTCTCTGTCATTGAGGAGGAGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-20-26,20-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.326
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.3=100)
A:
NA
C2:
PF0088817=Cullin=PD(16.0=77.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTGTGGCGGTCAC
R:
CATCTTCACCGCCTTGCTCAG
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)