HsaALTA0000892-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000204469 | BAT2
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:13918]
Coordinates
chr6:31588497-31590678:+
Coord C1 exon
chr6:31588497-31588635
Coord A exon
chr6:31590467-31590503
Coord C2 exon
chr6:31590504-31590678
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTGTTATGGTCTGTACAGGGG
3' ss Score
6.09
Exon sequences
Seq C1 exon
GGGCTCAGCCGCGGAGTGAGCGAGGGAGACGGGAGGAGCCGAACCCGGCGCCATCCGCCGCCATCCTCCCCCGCCCCACCGCCATCCCGTCCCGGGGAGCCCCTAGGCCCGGGTCCCGGATCCCCGCGCACCCGGCCAG
Seq A exon
GGGACAGAGACTGAGACACTTGCTGTCTGGCCCACAG
Seq C2 exon
GCTCTGGCACGTTTTGGGGGAGGTGCCTGCAGGACCCAACATACTCAATGAGCTTCCAGCGCAATGTCCGATCGCTCGGGGCCGACTGCCAAGGGAAAGGATGGAAAGAAGTATTCCTCGCTCAACCTGTTTGATACGTATAAGGGCAAGTCCTTAGAGATCCAGAAACCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.921
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF070016=BAT2_N=PU(19.3=97.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGCCGCCATCCTCC
R:
CAGGCACCTCCCCCAAAAC
Band lengths:
117-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)