HsaALTA0000979-5/5 @ hg38
Alternative 3'ss
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32976562-32977570:+
Coord C1 exon
chr6:32976562-32976936
Coord A exon
chr6:32977260-32977447
Coord C2 exon
chr6:32977448-32977570
Length
188 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GAAATGATTTCTTTTTCTAGACA
3' ss Score
6.69
Exon sequences
Seq C1 exon
AAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGCCATCTTGGCTCCTGGTTCTCCAGCTAGCCCTCCTGGGAGTCTTGAGCCTAAGGCAGCACGGCTTCCCCCTATGCGTAGAGAGAGTGGTCGCCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCTAAGAAAGGAAAGCTTTCAGAACAGTTAAAACATTGCAATGGCATTTTGAAGGAGTTACTCTCTAAGAAGCATGCTGCCTATGCTTGGCCTTTCTATAAACCAGTGGATGCTTCTGCACTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAG
Seq A exon
ACATAAATATTTCTTCAACCCACCCAAATTCCTTTGACTTCAAACTTGAACCCCAGGGCACAGATCCTTAAGGTCATCCCCACTGTGCTCTCAAGAGAGGGCTCTTCTTGTGGTGTCTGGGGTTGGCAGGGAAAGGTGAGTCTTCCTGCCTGTGCAGCTTCTGATGCTGCCTCCTTCTGCAGCGGAAG
Seq C2 exon
ATGGAGAACCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCCCCAGATCACGATGTTGTGGCAATGGCACGAAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-30-31,30-30,30-29,30-28,30-27-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF090735=BUD22=PU(20.2=52.0),PF0043920=Bromodomain=PU(52.8=37.6)
A:
NA
C2:
PF090735=BUD22=FE(13.0=100),PF0043920=Bromodomain=PD(44.9=93.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGCCTGACTCTCAGCA
R:
CCTGTGCATCCCGGTAATCAC
Band lengths:
245-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains