HsaALTA0000990-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000137948 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:1105]
Coordinates
chr1:92414928-92415515:+
Coord C1 exon
chr1:92414928-92415239
Coord A exon
NA
Coord C2 exon
chr1:92415457-92415515
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTCTTTGTAGTTCCTCTTAGGTC
3' ss Score
4.9
Exon sequences
Seq C1 exon
TATAAAAGCGCCTGTCGCGCGACCGCCATTACAACAAAAACTGGCGGCGAGGAACTGCGGAGAACTGTTGCCCTGCACCGCTTCATTTTGTGCAGCCTGAAAGGGGCAATCACATAAGGTCGGTTTTGTAATATACAGGTAACATACAGGTAATGTACCCTCCACAGGGGGTGCTGCCTTAGGCCGGCCCCGAGGTGCGGCCTTGGGTGGGAACAACCGTTTTTTCCCCCCTCTCCCCTCCCCGACCCCATCAACATCGTGCGACAGTCCGGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCAG
Seq A exon
NA
Seq C2 exon
GTCTTGGACTGGTGTGGATCGCTGCTGCCTGTACTGTAATTTTGGAAATGCAGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACATCGTGCGACAGTCC
R:
ATTACAGTACAGGCAGCAGCG
Band lengths:
103-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)