HsaALTA0001257-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000154479 | C2orf77
Description
chromosome 2 open reading frame 77 [Source:HGNC Symbol;Acc:25064]
Coordinates
chr2:170537517-170550943:-
Coord C1 exon
chr2:170550771-170550943
Coord A exon
NA
Coord C2 exon
chr2:170537517-170537691
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATCTGCCTCTTCTACCTAGCAA
3' ss Score
6.03
Exon sequences
Seq C1 exon
ACTTCCGGCGGCGTTGCCAAGCAACCGCGTGGTACGAGTAACAACTCCACCGGCTGGCGTCCGCGGCGCTTGGCGCCACAGTCACTTTTCCAGATCTAGGAGCATCATGGACACCTCGTCAGAGATGCTGGTACGGTTTGGACGGCGCTGTGGACGGGCGAAGGAAAGTACAG
Seq A exon
NA
Seq C2 exon
CAAAGTAGATCTCCAGCAGGTCACCATAATTCCACACGATGAGTGGAAAAGGATTCAAGATAGCCTTGACAGGTTGACAAGAGAAGCAGCATGCCTCCGTGCAGAAAGAAAGGCAAAGAAAGAAATGCATTTGCGATCTCAAGAAGTGGTAAAACACTGGACTAATACATATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGCGAAGGAAAGTACAG
R:
CTTTCTTTCTGCACGGAGGCA
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)