HsaALTA0001285-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000123838 | C4BPA
Description
complement component 4 binding protein, alpha [Source:HGNC Symbol;Acc:1325]
Coordinates
chr1:207277607-207286512:+
Coord C1 exon
chr1:207277607-207277775
Coord A exon
chr1:207286244-207286345
Coord C2 exon
chr1:207286346-207286512
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
TTGTTTTGTTTCCACTCCAGGCT
3' ss Score
8.78
Exon sequences
Seq C1 exon
TGAAATTCAGGGACTCTTTGGTGGAGCAATTACCAGTCAACTTCAGGGTATTATGATAAACTCTGATCTGGGGAGGAACCAGGACTACATAGATCAAGGCAGTTTTCTTCTTTGAGAAACTATCCCAGATATCATCATAGAGTCTTCTGCTCTTCCTCAACTACCAAAG
Seq A exon
GCTGTCATTTCCTTGAAGACATGGATCCCATAACATTTATTCTAGTGCTTTATGACAAGTTGGAATTCAATGACTATTTATTAAATTGAGTTCTTTCAGCAG
Seq C2 exon
AAAAACATCAGCGAAGCAGCAGGCCATGCACCCCCCAAAAACTCCATCTGGGGCTCTTCATAGAAAAAGGAAAATGGCAGCCTGGCCCTTCTCCAGGCTGTGGAAAGTCTCTGATCCAATTCTCTTCCAAATGACCTTGATCGCTGCTCTGTTGCCTGCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123838-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGGAACCAGGACTACAT
R:
CAACAGAGCAGCGATCAAGGT
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)