HsaALTA0001379-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128823796-128824174:-
Coord C1 exon
chr9:128824072-128824174
Coord A exon
NA
Coord C2 exon
chr9:128823796-128823863
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGGTGTTCGGGGGCCTCCAGGGT
3' ss Score
3.8
Exon sequences
Seq C1 exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAAGATGGGTATGACCTGACCATCGGGACGTCAGAGCGCGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
Seq A exon
NA
Seq C2 exon
GGTCTGGAAGCTGGAGCGGATGCTGACCCCAACCTGGAGGTGGCTGAACCCAGTGTCCTCTTTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-14-23,14-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCTTCCAAGATGGGTAT
R:
CTCCAGGTTGGGGTCAGCATC
Band lengths:
125-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development