HsaALTA0001385-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000197768 | STPG3
Description
sperm-tail PG-rich repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:37285]
Coordinates
chr9:137252437-137252965:+
Coord C1 exon
chr9:137252437-137252525
Coord A exon
chr9:137252827-137252838
Coord C2 exon
chr9:137252839-137252965
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
AGCCCCAGTCCCTGCTTCAGGCC
3' ss Score
2.22
Exon sequences
Seq C1 exon
AGGGCGGTGGCCGCAGGGCATGGCAGACTTTGTGGTTCCAGAGCGAAAGCCCCTTCACGCAGAAAGCTGACTTCGACCAAGAGCAAAAG
Seq A exon
GCCTCTTTGCAG
Seq C2 exon
GCACCTGGCAAGAGATGCCCTGGCCCCAACACCTACAATATCCTTCCTGGGAGCCGCCTGCAGAGCCCCCGCTCGCCGGCCTTCTCGATGAGCCGCTCCCCTGCGTTCACCTCCTGGCTCAGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197768-5-7,5-6,5-5,5-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.597
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACGCAGAAAGCTGACT
R:
CGGCTCCCAGGAAGGATATTG
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains