HsaALTA0001658-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000135218 | CD36
Description
CD36 molecule [Source:HGNC Symbol;Acc:HGNC:1663]
Coordinates
chr7:80674145-80676484:+
Coord C1 exon
chr7:80674145-80674147
Coord A exon
chr7:80676108-80676383
Coord C2 exon
chr7:80676384-80676484
Length
276 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
GATATACTGCCACTCTACAGGTA
3' ss Score
6.84
Exon sequences
Seq C1 exon
TAA
Seq A exon
GTAGTAAATGATTCTTCACATTTGTGCGCCAGCTACATCATGACCCTTGGTAATACCGACCAACAGGATGAAAATTGGATATGCTTTACTTTTACAAAGCACACCTTATCTTTTAGTTGAAGAAATGGTGGCACTATTTCTTTTTTTGCACTAAGCAACTGCACATTTCAAAAGGATTATTGAGATGTTATGAAAATCTCTACCTTGCACAAAAAAAAACCCAGCAGCTTTTAAAATTCATCATTTCCACAACTGAATTGATTTCCGTTTCTACAG
Seq C2 exon
ACCTGGCTCAAGCACAAACCAATTTGTGTTGTTCTGATTCAATAATTGGTTTCTGGGTGGCCAATTCAGAAGAAGAGTGTACATGCTCAACAAATCCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135218-74-87,74-86-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(10.1=83.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development